Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq411 259 6e-64 seq887 93.3 5e-14 >seq411 Length=256942 Score = 259 bits (286), Expect = 6e-64 Identities = 1169/1819 (64%), Gaps = 43/1819 (2%) Strand=Plus/Plus Query 110354 GCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGC 110413 ||| ||| |||||||||||||||||| |||||||| || ||||| | | |||| Sbjct 121142 GCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGGCCCAACTTCCAACCTGCAAAATGC 121201 Query 110414 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGG 110473 ||| | || |||| ||| || ||| | |||| || |||||| |||| ||| Sbjct 121202 ATACTGGTGATCTTGCCCATTGTAGGATCCTTCATGTGGATGTTCATTGATTGAGATTGA 121261 Query 110474 TCAATG-AAGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTA---ATTTC 110529 |||||| |||| || | | | || ||||| | | || | | | || | ||||| Sbjct 121262 TCAATGTAAGCACCACGATCG-GCAGCCATCTGGACGA--TGGTACG-CTGAGAGATTTC 121317 Query 110530 CCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGA 110589 ||| || || |||||| |||||| ||| |||| || | | | ||| || || || Sbjct 121318 CCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATGTTAGGAACATTTTGAATCGA 121377 Query 110590 ACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAG 110649 ||| || | | || || |||||| | | ||||| || || || | || Sbjct 121378 ACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGACCATAGTCCCATATCAACAAG 121437 Query 110650 GTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTA 110709 || || | | |||||| | ||||| || ||||| | | ||| Sbjct 121438 ATCCTTCAACAACCATGGGTTGACGACTTGGAACTCTCCAGCGAGCACACGACGAGAGTA 121497 Query 110710 GATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGGAGG 110768 |||||| | |||||||| || |||||||| || |||||||| |||| ||| || Sbjct 121498 GATGTTGGAGGTGTATGGCTCGAAGCATTCGTTGA-ACCCAAGAATTTGACTGGTACTGG 121556 Query 110769 CTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCT 110828 | || ||||| || || | | | |||||| || | ||| | | |||||| ||| || Sbjct 121557 CAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGATACCATATTGCTTGATTTGTTGCT 121616 Query 110829 TGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAG 110886 | ||| |||||| || || || | |||| | || ||||||| || | ||||| Sbjct 121617 TCAGAGAATCCCAATCCCAGA-GATCAGTTGGAGTGACAC-CCCACATATCGTATTGAAG 121674 Query 110887 CACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTC--AGCC 110944 | | || | || | ||||| ||||| | || || || | || | |||| ||| Sbjct 121675 CTCACCCTTCGAGACTGGAGATCCCTCGTATGTCTCGTATGGTCCAAG--CTTCTTAGCG 121732 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 | ||| | || || | ||||| || || || |||||||| | || | Sbjct 121733 AGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAGTCTCAAAGATCTGGATGTTGAGA 121792 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATA-AATACATCCGCGAGACC 111063 | |||||| ||| ||| || |||| | || ||| | | || ||||| || ||||| Sbjct 121793 TGCTTGGCCTCAGGTGACTCGAATG-GCAGACGCAGAGCCAAGAAGACATCAGCAAGACC 121851 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC-AACGG 111122 ||||||||| | | ||||||||||||| || | || || || || ||| ||| | Sbjct 121852 TTGAACACCAAGAGCAATAGGTCTGTGACGGAAGTTGGATTTCTTTGCT-TCTGGAACTG 121910 Query 111123 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 111182 | || | || || |||| ||| || || ||| |||| || || || | Sbjct 121911 GGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCTTGACCACAACCTGGCAGACCTCGT 121970 Query 111183 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG--ACATACTTTGGAAGGGCGAT 111240 | || || | | ||| | || | || | ||||| || || | ||||| || || Sbjct 121971 GGAGCTTCTGGAAGTCATAGGTACC-GT-TGTTCATGTCAACGTAGGTGGGAAGCGCCAT 122028 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 |||||||| || || ||| |||||| | | |||||| | ||| || || || Sbjct 122029 GGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGCGGAGTACTCGACAATCTCAGTGCA 122088 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATC 111360 | |||||| || ||| || || | |||||| ||||| ||||| |||||| ||||| Sbjct 122089 CAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTTGCTCTTTCGGTTGCAAGCATC 122148 Query 111361 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA- 111419 ||||||||||||| |||| | || ||||| || || | || |||||| | | ||||| Sbjct 122149 CTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCGAGAATGGAGTACCAAAG 122208 Query 111420 CATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGA 111476 || | | || | |||| ||| | || | ||||| ||||| ||||| ||| | Sbjct 122209 TTTCTGTGCCTTG----ATGGTCTTGCGACCCTTGCCCTCAGCCTCATACTTCTCGTATA 122264 Query 111477 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 111536 | || || || || ||||| | || | |||||||| || || || || | | Sbjct 122265 GAGCCTCGAATTCATCACCATAGACATCTGCAAGACCTGGGCACTCGTTGGGGCACATCA 122324 Query 111537 GAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATG 111596 | | |||| ||| | ||||| ||||||||||| || ||||| ||||| || | Sbjct 122325 GTGTCCATGTGCCATTCTTTTCAACACGCTTCATGAACAGATCTGGGATCCAGAGAGCGT 122384 Query 111597 AAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACT 111656 | |||||||| | | ||| | ||||| | || || || ||| | |||||| ||| Sbjct 122385 AGAAGAGATCACGAGCGCGAACTTCTTCCTTGCCGTGATTTTTTCGGAGATCAAGGTACT 122444 Query 111657 CCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCC 111713 | | | ||| |||||||||||||| || |||| |||| | || ||| | Sbjct 122445 CGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGTCGCTTGTTTC 122504 Query 111714 CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT 111773 || | || | ||||| | || ||| ||| || || | ||||| |||| ||||| | Sbjct 122505 CACCCTGGTCAACATATCTGGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATACCGT 122564 Query 111774 CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCA 111833 || | || ||||| || ||| || | |||||| | |||| | | Sbjct 122565 TGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTCGAATTCTGTGGACATTGA 122624 Query 111834 TCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATAC 111893 || ||||| ||||| ||| ||||| ||||| | | || || | ||||||| Sbjct 122625 GACCGATACCACCAGCATTCTTAGAGATCATGGCACAAGTCTTGAGCGTGTCGTAGATAC 122684 Query 111894 CGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTG 111953 | | || || ||||| || | || | |||||| || | || | ||||| Sbjct 122685 CATCAATACTATCATCCTTCATGTCAATTAAGAAGCACGAAGAAAGTTGTGCCTGTGGTG 122744 Query 111954 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTC 112011 | || ||| |||||| ||||| | ||||| |||| || ||| |||||| || Sbjct 122745 TGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTGAA-GTA-TTTGCCTGACATCAGGTT 122802 Query 112012 GTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAA 112071 |||||||| | | | || || || || ||||| ||||| | ||| || ||||||| Sbjct 122803 ATATGTCTCAATTGCTGCCTCGATATCCTCGCCGTGAATGCCAACTGCTACACGCATGAT 122862 Query 112072 CATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAA 112130 ||||| ||| ||| ||| || |||||||||| || |||| || | || | || | Sbjct 122863 CATGTGCTGCGGGCGTTCGCAGATTTTGCCATCGAGGCGGAGAAGGTATGATCGT-TCGA 122921 Query 112131 GGGTTTTGAGACCAAAGTA 112149 |||| |||| ||| ||||| Sbjct 122922 GGGTCTTGAAACCGAAGTA 122940 >seq887 Length=503426 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| |||||||| || || ||||| | || || |||||| || || Sbjct 202212 GCAAAGTCAGTGTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCG 202153 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 | |||||| || |||||||||||||| | |||| | |||||| || |||||||||| Sbjct 202152 GCCATGAGGCCACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATA 202093 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838 ||||| || || || |||| | ||| | || || | | ||||| | | | | Sbjct 202092 CCCTCAACGGCGGCGAATGCAACCAAGCGCTGAGCAAATGTGGATGACTTGTCTTGGATC 202033 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTAC 122879 ||| | ||||| | |||||||||| ||| || || || Sbjct 202032 CATCGTACAGCCCAGTCGGCCTTCTTCTTAATGCAGGGGAC 201992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024738380000