Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq411 259 6e-64
seq887 93.3 5e-14
>seq411
Length=256942
Score = 259 bits (286), Expect = 6e-64
Identities = 1169/1819 (64%), Gaps = 43/1819 (2%)
Strand=Plus/Plus
Query 110354 GCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGC 110413
||| ||| |||||||||||||||||| |||||||| || ||||| | | ||||
Sbjct 121142 GCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGGCCCAACTTCCAACCTGCAAAATGC 121201
Query 110414 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGG 110473
||| | || |||| ||| || ||| | |||| || |||||| |||| |||
Sbjct 121202 ATACTGGTGATCTTGCCCATTGTAGGATCCTTCATGTGGATGTTCATTGATTGAGATTGA 121261
Query 110474 TCAATG-AAGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTA---ATTTC 110529
|||||| |||| || | | | || ||||| | | || | | | || | |||||
Sbjct 121262 TCAATGTAAGCACCACGATCG-GCAGCCATCTGGACGA--TGGTACG-CTGAGAGATTTC 121317
Query 110530 CCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGA 110589
||| || || |||||| |||||| ||| |||| || | | | ||| || || ||
Sbjct 121318 CCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATGTTAGGAACATTTTGAATCGA 121377
Query 110590 ACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAG 110649
||| || | | || || |||||| | | ||||| || || || | ||
Sbjct 121378 ACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGACCATAGTCCCATATCAACAAG 121437
Query 110650 GTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTA 110709
|| || | | |||||| | ||||| || ||||| | | |||
Sbjct 121438 ATCCTTCAACAACCATGGGTTGACGACTTGGAACTCTCCAGCGAGCACACGACGAGAGTA 121497
Query 110710 GATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGGAGG 110768
|||||| | |||||||| || |||||||| || |||||||| |||| ||| ||
Sbjct 121498 GATGTTGGAGGTGTATGGCTCGAAGCATTCGTTGA-ACCCAAGAATTTGACTGGTACTGG 121556
Query 110769 CTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCT 110828
| || ||||| || || | | | |||||| || | ||| | | |||||| ||| ||
Sbjct 121557 CAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGATACCATATTGCTTGATTTGTTGCT 121616
Query 110829 TGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAG 110886
| ||| |||||| || || || | |||| | || ||||||| || | |||||
Sbjct 121617 TCAGAGAATCCCAATCCCAGA-GATCAGTTGGAGTGACAC-CCCACATATCGTATTGAAG 121674
Query 110887 CACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTC--AGCC 110944
| | || | || | ||||| ||||| | || || || | || | |||| |||
Sbjct 121675 CTCACCCTTCGAGACTGGAGATCCCTCGTATGTCTCGTATGGTCCAAG--CTTCTTAGCG 121732
Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004
| ||| | || || | ||||| || || || |||||||| | || |
Sbjct 121733 AGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAGTCTCAAAGATCTGGATGTTGAGA 121792
Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATA-AATACATCCGCGAGACC 111063
| |||||| ||| ||| || |||| | || ||| | | || ||||| || |||||
Sbjct 121793 TGCTTGGCCTCAGGTGACTCGAATG-GCAGACGCAGAGCCAAGAAGACATCAGCAAGACC 121851
Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC-AACGG 111122
||||||||| | | ||||||||||||| || | || || || || ||| ||| |
Sbjct 121852 TTGAACACCAAGAGCAATAGGTCTGTGACGGAAGTTGGATTTCTTTGCT-TCTGGAACTG 121910
Query 111123 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 111182
| || | || || |||| ||| || || ||| |||| || || || |
Sbjct 121911 GGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCTTGACCACAACCTGGCAGACCTCGT 121970
Query 111183 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG--ACATACTTTGGAAGGGCGAT 111240
| || || | | ||| | || | || | ||||| || || | ||||| || ||
Sbjct 121971 GGAGCTTCTGGAAGTCATAGGTACC-GT-TGTTCATGTCAACGTAGGTGGGAAGCGCCAT 122028
Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300
|||||||| || || ||| |||||| | | |||||| | ||| || || ||
Sbjct 122029 GGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGCGGAGTACTCGACAATCTCAGTGCA 122088
Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATC 111360
| |||||| || ||| || || | |||||| ||||| ||||| |||||| |||||
Sbjct 122089 CAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTTGCTCTTTCGGTTGCAAGCATC 122148
Query 111361 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA- 111419
||||||||||||| |||| | || ||||| || || | || |||||| | | |||||
Sbjct 122149 CTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCGAGAATGGAGTACCAAAG 122208
Query 111420 CATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGA 111476
|| | | || | |||| ||| | || | ||||| ||||| ||||| ||| |
Sbjct 122209 TTTCTGTGCCTTG----ATGGTCTTGCGACCCTTGCCCTCAGCCTCATACTTCTCGTATA 122264
Query 111477 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 111536
| || || || || ||||| | || | |||||||| || || || || | |
Sbjct 122265 GAGCCTCGAATTCATCACCATAGACATCTGCAAGACCTGGGCACTCGTTGGGGCACATCA 122324
Query 111537 GAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATG 111596
| | |||| ||| | ||||| ||||||||||| || ||||| ||||| || |
Sbjct 122325 GTGTCCATGTGCCATTCTTTTCAACACGCTTCATGAACAGATCTGGGATCCAGAGAGCGT 122384
Query 111597 AAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACT 111656
| |||||||| | | ||| | ||||| | || || || ||| | |||||| |||
Sbjct 122385 AGAAGAGATCACGAGCGCGAACTTCTTCCTTGCCGTGATTTTTTCGGAGATCAAGGTACT 122444
Query 111657 CCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCC 111713
| | | ||| |||||||||||||| || |||| |||| | || ||| |
Sbjct 122445 CGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGTCGCTTGTTTC 122504
Query 111714 CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT 111773
|| | || | ||||| | || ||| ||| || || | ||||| |||| ||||| |
Sbjct 122505 CACCCTGGTCAACATATCTGGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATACCGT 122564
Query 111774 CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCA 111833
|| | || ||||| || ||| || | |||||| | |||| | |
Sbjct 122565 TGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTCGAATTCTGTGGACATTGA 122624
Query 111834 TCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATAC 111893
|| ||||| ||||| ||| ||||| ||||| | | || || | |||||||
Sbjct 122625 GACCGATACCACCAGCATTCTTAGAGATCATGGCACAAGTCTTGAGCGTGTCGTAGATAC 122684
Query 111894 CGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTG 111953
| | || || ||||| || | || | |||||| || | || | |||||
Sbjct 122685 CATCAATACTATCATCCTTCATGTCAATTAAGAAGCACGAAGAAAGTTGTGCCTGTGGTG 122744
Query 111954 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTC 112011
| || ||| |||||| ||||| | ||||| |||| || ||| |||||| ||
Sbjct 122745 TGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTGAA-GTA-TTTGCCTGACATCAGGTT 122802
Query 112012 GTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAA 112071
|||||||| | | | || || || || ||||| ||||| | ||| || |||||||
Sbjct 122803 ATATGTCTCAATTGCTGCCTCGATATCCTCGCCGTGAATGCCAACTGCTACACGCATGAT 122862
Query 112072 CATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAA 112130
||||| ||| ||| ||| || |||||||||| || |||| || | || | || |
Sbjct 122863 CATGTGCTGCGGGCGTTCGCAGATTTTGCCATCGAGGCGGAGAAGGTATGATCGT-TCGA 122921
Query 112131 GGGTTTTGAGACCAAAGTA 112149
|||| |||| ||| |||||
Sbjct 122922 GGGTCTTGAAACCGAAGTA 122940
>seq887
Length=503426
Score = 93.3 bits (102), Expect = 5e-14
Identities = 153/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718
||||| || ||| |||||||| || || ||||| | || || |||||| || ||
Sbjct 202212 GCAAAGTCAGTGTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCG 202153
Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778
| |||||| || |||||||||||||| | |||| | |||||| || ||||||||||
Sbjct 202152 GCCATGAGGCCACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATA 202093
Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838
||||| || || || |||| | ||| | || || | | ||||| | | | |
Sbjct 202092 CCCTCAACGGCGGCGAATGCAACCAAGCGCTGAGCAAATGTGGATGACTTGTCTTGGATC 202033
Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTAC 122879
||| | ||||| | |||||||||| ||| || || ||
Sbjct 202032 CATCGTACAGCCCAGTCGGCCTTCTTCTTAATGCAGGGGAC 201992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628024738380000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |