Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq411 239 6e-58 seq887 118 1e-21 >seq411 Length=256942 Score = 239 bits (264), Expect = 6e-58 Identities = 1087/1688 (64%), Gaps = 53/1688 (3%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||| |||||| || ||| ||| |||||| ||||||||||| |||||||| | Sbjct 121119 TGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGGC 121178 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 || |||||| | | |||||| || | |||| | || ||| | |||| Sbjct 121179 CCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTGTAGGATCCTTCATGT 121238 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATG-AAGCGTCCCCGATCCGCCGCCATATCAATC 117983 || |||||| ||| |||||||| ||| |||| || ||||| || ||||| | | Sbjct 121239 GGATGTTCATTGATTGAGATTGATCAATGTAAGCA-CCACGATCGGCAGCCATCTGGACG 121297 Query 117984 ACATCCTTCATCTT---GATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGG 118040 | | | | || ||||||||| || ||| ||||||| ||| || ||| |||| Sbjct 121298 A--TGGTACG-CTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGA 121354 Query 118041 ATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTT 118100 || | | |||||| || || ||||| | || || || |||||| | | | Sbjct 121355 ATGTTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCT 121414 Query 118101 GACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAACT 118158 ||||| || || || | ||||||| || | ||| | |||| || |||| Sbjct 121415 GACCATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGT--TGACGACTTGGAACT 121472 Query 118159 CACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTG 118217 | || ||||| || | ||| ||||| |||| ||||||||||| ||||| || ||| Sbjct 121473 CTCCAGCGAGCACACGACG-AGAGTAGATGTTGGAGGTGTATGGCTCGAAGCATTCGTTG 121531 Query 118218 TTACCCAAGATTTGGGCTG-TGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 118276 |||||||| || | ||| | ||| |||||||| || || | || | ||||| || Sbjct 121532 A-ACCCAAGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCG 121590 Query 118277 GAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGC--TTTGTC 118334 || ||| | || | | || ||| ||| |||| ||||| || || || | || | Sbjct 121591 GATACCATATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGA-GATCAGTTGGAG 121649 Query 118335 TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTC 118394 | | | ||||||||| | || || ||| | || |||| |||||||| ||||| Sbjct 121650 TGACACC-CCACATATCGTATTGAAGCTCACCCTTCGAGACTGGAGATCCCTCGTATGTC 121708 Query 118395 TCATATGGGCCCTCAACCTCC---GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATAC 118451 || ||||| || || || | || | || | || | || ||||| || Sbjct 121709 TCGTATGGTCC---AAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAG 121765 Query 118452 ATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGG 118511 || || ||||| || | || | ||||||||| || || || | || || Sbjct 121766 ATAGTCTCAAAGATCTGGATGTTGAGATGCTTGGCCTCAGGTGACTCGAATGGCAGACG- 121824 Query 118512 CACAAAATA-AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 118570 || | | || ||||| || |||||||| ||||| || |||| || | || | | Sbjct 121825 CAGAGCCAAGAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAA 121884 Query 118571 ATTAGACTTCCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGAT 118629 || || ||| || ||| | | || || | || ||||| | | | || || | Sbjct 121885 GTTGGATTTCTTTGCT-TCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGT 121943 Query 118630 TTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTT 118689 | ||| ||||||| || || || ||||| | | | ||| | | | || | || Sbjct 121944 TCTTGACCACAACCTGGCAGACCTCGTGGAGCTTCTGGAAGTCATAGGTACC-GT-TGTT 122001 Query 118690 CATTG--ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 118747 ||| || || | ||||| || || || |||| ||||| || | |||||| Sbjct 122002 CATGTCAACGTAGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGG 122061 Query 118748 ATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTT 118807 | | |||||| | ||| || ||||||| ||| || || |||||| || | ||||| Sbjct 122062 TGCGGAGTACTCGACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTT 122121 Query 118808 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 118867 || || |||| ||| || ||||||||||| |||||| | || | || ||||| || Sbjct 122122 CTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGT 122181 Query 118868 TTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGC-- 118925 ||||| | |||||| | | ||| | | | | || | ||| ||| | | Sbjct 122182 TTGGGCTTCGAGAATGGAGTACCAAAGTTT--CTG-TGCCTTGATGGTCTTGCGACCCTT 122238 Query 118926 -CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAG 118984 ||||| |||| ||||| ||| || || || || || ||||| | | |||| || Sbjct 122239 GCCCTCAGCCTCATACTTCTCGTATAGAGCCTCGAATTCATCACCATAGACATCTGCAAG 122298 Query 118985 CCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 119044 ||||| || | ||||| | || | |||| ||| || ||||| |||||||| Sbjct 122299 ACCTGGGCACTCGTTGGGGCACATCAGTGTCCATGTGCCATTCTTTTCAACACGCTTCAT 122358 Query 119045 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 119104 ||| || |||||||||||||| || |||||||||| ||| |||| ||||||| | || Sbjct 122359 GAACAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGCC 122418 Query 119105 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 119164 ||||| || | || | | || | | ||| |||||||| || || ||||| | Sbjct 122419 GTGATTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGAT 122478 Query 119165 CGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTT 119218 |||| || || | | || ||| |||||| ||||| || |||||| ||| Sbjct 122479 GGCGAATGCACC---AGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTT 122535 Query 119219 AAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGA 119278 || || | ||||| |||| |||||| | ||| | ||| ||||| || ||| || Sbjct 122536 GAACACTCTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGC 122595 Query 119279 CTTATTGGCTCTGACATC-GTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 119337 |||||| || || ||||| | | ||| ||||| || || ||| ||||| Sbjct 122596 TCCGGTGGCTC-GAATTCTGTGGACATTGAGACCGATACCACCAGCATTCTTAGAGATCA 122654 Query 119338 GCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 119397 || || | |||| || ||||||| ||||| || ||| |||| | | || | Sbjct 122655 TGGCACAAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAATTA 122714 Query 119398 GGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCG 119456 |||||| || | ||| ||||| ||||| || || |||||| ||||| | ||| Sbjct 122715 AGAAGCACGAAGAAAGTTG-TGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCG 122773 Query 119457 TGGATGAA 119464 || |||| Sbjct 122774 TGTGTGAA 122781 >seq887 Length=503426 Score = 118 bits (130), Expect = 1e-21 Identities = 298/448 (67%), Gaps = 4/448 (1%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || ||||| |||||||| |||||||||||||| ||| | | ||| |||||||| Sbjct 202500 TAATCACCAACACGCTTCTCAAAGAAGTTTGTCTTGCCGGCAAGAGAGATGTTCTCCATG 202441 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846 || || |||||||| || || | | | || | | |||| ||| ||||| Sbjct 202440 AAGTCGAATGGGTTGGCAGATTTGTAGACTT-TGTCGTTGCCAAGGGCAAGGAGAAGACG 202382 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | || |||||||||| | |||| | ||||||||| |||| || ||| Sbjct 202381 ATCAGCAACAAACTCAATGTATTGCTTCATCAGGTTGGAGTTCATGCCGAGAAGAGCACA 202322 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || | ||| ||| ||| || || ||||| || | || | || Sbjct 202321 AGGAAGAGCCTCGGTCAAAAACTCCTGCTCGATTTCAACAGCCTCAGTGATGACATCTTG 202262 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCAAACTCCT 130025 || | | | ||| || | || || |||| |||||| ||||| || Sbjct 202261 AACTGCTTGCTTGCTTGGGCGAT-GCTTCAAGTGAGAGAAGAGGAGGCAAGCAAAGTCAG 202203 Query 130026 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 130085 ||| |||||||||||||| || || | || || |||||| || || | |||||| | Sbjct 202202 TGTGAAGACCCTCGTCACGAGAAATTAACTCGTTGGAGAAGGTAAGTCCGGCCATGAGGC 202143 Query 130086 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 130145 | ||||||||||||||||| || | ||||| ||| ||||||||| ||||| || Sbjct 202142 CACGCTTCTTCAACCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCCTCAACGG 202083 Query 130146 ACGCGAACGCAAAGAGACGCTCAGCAAA 130173 ||||| |||| | |||| |||||| Sbjct 202082 CGGCGAATGCAACCAAGCGCTGAGCAAA 202055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618428049343000