Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq411 269 3e-67 seq887 109 6e-19 seq511 89.7 6e-13 >seq411 Length=256942 Score = 269 bits (298), Expect = 3e-67 Identities = 1184/1827 (65%), Gaps = 59/1827 (3%) Strand=Plus/Minus Query 104156 TATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGTGTCTTGAT 104214 || || ||| |||| ||||| || | || | || |||| || |||||||| | Sbjct 122940 TACTTCGGTTTCAAGACCCTCGA-ACGATCATACCTTCTCCGCCTCGATGGCAAAATCTG 122882 Query 104215 GGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGA 104274 ||| ||| ||| ||||| ||||||| || || | || ||||| || || || || || Sbjct 122881 CGAACGCCCGCAGCACATGATCATGCGTGTAGCAGTTGGCATTCACGGCGAGGATATCGA 122822 Query 104275 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 104332 | | | |||||||| || |||||| ||| || |||| ||||| | ||| Sbjct 122821 GGCAGCAATTGAGACATATAACCTGATGTCAGGCAAA-TAC-TTCACACACGCTTCGCCA 122764 Query 104333 ACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAAC 104392 || |||||| ||| || |||||| | ||| | || |||||| | || | || Sbjct 122763 ACACTCTTCGCTGCCGGCACACCACAGGCACAACTTTCTTCGTGCTTCTTAATTGACATG 122704 Query 104393 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 104452 ||||| || || | |||||||| | || || | | ||||| ||||| ||| Sbjct 122703 AAGGATGATAGTATTGATGGTATCTACGACACGCTCAAGACTTGTGCCATGATCTCTAAG 122644 Query 104453 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 104512 ||||| ||||| || | | |||| | |||||| | || ||| Sbjct 122643 AATGCTGGTGGTATCGGTCTCAATGTCCACAGAATTCGAGCCACCGGAGCTTACATTGCT 122584 Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572 || ||||| || | || | ||||| |||| ||||| | || || ||| ||| || Sbjct 122583 GGCACAAACGGCAACTCCAACGGTATCGTTCCTATGCTCAGAGTGTTCAACAACACTGCC 122524 Query 104573 CGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCA 104629 | ||||| | || | ||| ||| || | |||| |||| || |||||| Sbjct 122523 AGATATGTTGACCAGGGTGGAAACAAGCGACCTGGTGCATTCGCCATCTACCTCGAGCCA 122464 Query 104630 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG-- 104687 |||||||| ||| | | |||| |||||| | || || || || | || || | Sbjct 122463 TGGCACGCAGATGTTTTCGAGTACCTTGATCTCCGAAAAAATCACGGCAAGGAAGAAGTT 122404 Query 104688 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 104747 |||| | || |||||||||| |||||||||||| |||||||| ||||||||| | |||| Sbjct 122403 CGCGCT--CGTGATCTCTTCTACGCTCTCTGGATCCCAGATCTGTTCATGAAGCGTGTTG 122346 Query 104748 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCG 104807 | ||| ||||| ||| | || | || || || || || ||||| | |||| | Sbjct 122345 AAAAGAATGGCACATGGACACTGATGTGCCCCAACGAGTGCCCAGGTCTTGCAGATGTCT 122286 Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC-- 104865 ||||| || || || || || ||| ||||| |||| | ||| | | | | || Sbjct 122285 ATGGTGATGAATTCGAGGCTCTATACGAGAAGTATGAGGCTG-AGGGCAAGGGTC-GCAA 122228 Query 104866 GACGGTGCCAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 104924 ||| | | || | | | | ||| | | |||||| | | |||||||||||||| | Sbjct 122227 GACCAT-CAAGGCACAGAAACTTTGGTACTCCATTCTCGAAGCCCAAACCGAGACTGGAA 122169 Query 104925 CACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTG 104984 || | |||||| ||||| || || || |||| |||||| || || |||||| | ||| Sbjct 122168 ACCCCTTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGCAACCAGAAGAATCTCGGTA 122109 Query 104985 TGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044 || || ||||| || || || || || | || | | | ||||||| | Sbjct 122108 CCATTCGAAGCTCCAACCTGTGCACTGAGATTGTCGAGTACTCCGCACCAGATGAGGTCG 122049 Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--AC 105102 || |||||| | ||||| || || || |||| || || || || |||| | || Sbjct 122048 CTTGCTGTAACTTGGCATCCATGGCGCTTCCCACCTACGTTGA--CATGAACAACGGTAC 121991 Query 105103 ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGT 105162 | ||| | | || |||||||| || | ||| ||| ||||| |||| | Sbjct 121990 CTATGACTTCCAGAAGCTCCACGAGGTCTGCCAGGTTGTGGTCAAGAACCTGAACAAGAT 121931 Query 105163 TATTGATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTC 105221 || || || | ||||| ||| ||| || ||||| || | | ||| | | Sbjct 121930 CATCGAGGTCAACTACTACCCAGTTCCAGA-AGCAAAGAAATCCAACTTCCGTCACAGAC 121872 Query 105222 CAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTT 105280 | |||| ||| |||||||| ||||| || ||||| ||| | || || || | |||| Sbjct 121871 CTATTGCTCTTGGTGTTCAAGGTCTTGCTGATGTCTTCTTGGCTCTG-CGTCTGCCATTC 121813 Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340 || || || || ||| | |||| | || |||||||| || || ||||||||| Sbjct 121812 GAGTCACCTGAGGCCAAGCATCTCAACATCCAGATCTTTGAGACTATCTACCACGCCGCT 121753 Query 105341 CTTGAGGCGAGTTC---AGAGTTGGC--AGAGGTTGATGGTCCATATGAAACCTTTGAGG 105395 |||| | ||| || | || ||| | | ||| ||||| || || | |||| Sbjct 121752 -TTGA--CTGCTTCCGTTGATCTCGCTAAGAAGCT--TGGACCATACGAGACATACGAGG 121698 Query 105396 GTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT-- 105453 | ||||||| || | || | |||||||| |||||||||| || | |||| || Sbjct 121697 GATCTCCAGTCTCGAAGGGTGAGCTTCAATACGATATGTGGG-GTGTCACTCCAA-CTGA 121640 Query 105454 TCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 105513 || || || ||||| |||| ||| ||| |||||| | | ||| | || |||||| | Sbjct 121639 TCTCTGGGATTGGGATTCTCTGAAGCAACAAATCAAGCAATATGGTATCCGCAACAGTTT 121580 Query 105514 CCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATGCT 105572 || | ||||| ||||| || ||| ||| |||| |||||||| || ||||||| Sbjct 121579 GCTTGTTGCTCCTATGCCCACTGCCAGTACCAGTCAAATTCTTGGGT-TCAACGAATGCT 121521 Query 105573 TTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATT 105631 | || || ||||| | |||||||| ||| | | ||||| |||||||| | Sbjct 121520 TCGAGCCATACACCTCCAACATCTACTCT-CGTCGTGTGCTCGCTGGAGAGTTCCAAGTC 121462 Query 105632 GTCAACAAGCAT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGA 105689 |||||| ||| | || | || || || || || || ||||| | | |||| Sbjct 121461 GTCAAC--CCATGGTTGTTGAAGGATCTTGTTGATATGGGACTATGGTCAGACAACATGA 121404 Query 105690 AGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAA 105749 || || || | || |||||||| ||||||||| || | |||||| ||| | Sbjct 121403 AGAATAGAATCATCGCAGATGGTGGTTCGATTCAAAATGTTCCTAACATTCCAGCTGACA 121344 Query 105750 TTAAGAAGTTGTACCGCACAGTTTGGGAAATC---AAGATGAAGGATGTCATTGACATGG 105806 | ||| | ||| || || ||||||||| || | | | || | | |||| Sbjct 121343 TCAAGGCTCTCTACAAGACCGTCTGGGAAATCTCTCAG-CGTACCA--TCGTCCAGATGG 121287 Query 105807 CCGCAGATCGTGGTCGCTT-CATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGT 105865 | || ||||||||| |||| |||||||||| |||| ||||| || |||| | | Sbjct 121286 CTGCCGATCGTGGT-GCTTACATTGATCAATCTCAATCAATGAACATCCACATGAAGGAT 121228 Query 105866 CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACA-GTTGGAAGAAGGGTCTCAAAAC 105924 || || ||| |||| || | |||||| | | || |||||||| ||| ||||| || Sbjct 121227 CCTACAATGGGCAAGATCACCAGTATGCA-TTTTGCAGGTTGGAAGTTGGGCCTCAAGAC 121169 Query 105925 GGGGATGTATTACCTCCGATCTAAGGC 105951 |||||||| || |||||| | | ||| Sbjct 121168 TGGGATGTACTATCTCCGAACAATGGC 121142 >seq887 Length=503426 Score = 109 bits (120), Expect = 6e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 |||||| |||| | | ||||| || |||||||||||||||||| |||||| ||| Sbjct 202055 TTTGCTCAGCGCTTGGTTGCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCATTC 202114 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 | |||| | ||| | |||||||| || |||||| | || || ||||||||||||| Sbjct 202115 GCCTCTATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAACGAG 202174 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 | || |||||||||||||| || ||| || ||||| Sbjct 202175 TTAATTTCTCGTGACGAGGGTCTTCACACTGACTTTGC 202212 >seq511 Length=229750 Score = 89.7 bits (98), Expect = 6e-13 Identities = 167/238 (70%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 9695 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG-TTGAT-TTTCGCGAGCGA 9752 ||||| | || ||||| ||||||||||||| |||||| || || | |||| | || | Sbjct 195298 TTTCCAATAGCGTCAATTTCATCAATGAAGATGATGCAGGGAGTGTTCTTTCTC--GCCA 195241 Query 9753 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812 | | |||||||| | || | | || || ||||| || ||||| |||||||| | | Sbjct 195240 TTGCGAAGAGATCTCTAACTCTCGAAGCACCAACACCGACGAACATTTCCACAAACTCGG 195181 Query 9813 --CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9870 | || | ||| | || ||| || || | || || || ||| |||| || | ||| Sbjct 195180 AACCGCTG-ACACT-GAAGAATGGTACCTGTGACTCTCCAGCAGTGGCCTTTGCTAAAAG 195123 Query 9871 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 ||||||||| ||||| || || | || | || |||||||||||||| |||||| Sbjct 195122 AGTCTTACCAGTACCAGGTGGTCCAGAAAGAATAGCTCCTCGTGGAATCTTCGCGCCA 195065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583254056047000