Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq411 201 1e-46 seq887 114 1e-20 >seq411 Length=256942 Score = 201 bits (222), Expect = 1e-46 Identities = 1121/1759 (64%), Gaps = 55/1759 (3%) Strand=Plus/Plus Query 78189 TGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACT 78248 |||||| | ||||||||| || |||||||| ||| |||||| || | |||||||| Sbjct 121147 TGTTCGGAGATAGTACATCCCAGTCTTGAGGCCCAACTTCCAACCTGCAAAATGCATACT 121206 Query 78249 CGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGAT 78308 | | |||| ||| | || | || |||| |||||| | || || || || || || Sbjct 121207 GGTGATCTTGCCCATTGTAGGATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAAT 121266 Query 78309 GTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGT 78368 ||| ||||| || ||||| ||||| | || || | || | || ||||||| ||| Sbjct 121267 GTAAGCACCACGATCGGCAGCCATCTGGACGATGGTACGCTGAGAGATTTCCCAGACGGT 121326 Query 78369 CCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTACGCTC---CCACCGGC 78425 | ||| | ||||| | || | | |||| | | | | || ||||| | Sbjct 121327 CTTGTAGAGAGCCTTGATGTCAGCTGGAATGTTAGGAACATTTTGAATCGAACCACCATC 121386 Query 78426 TCGCACAATTTCATTCTTAAT-TTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCGGA 78484 | | ||| |||||| || ||| | ||| | || | ||||||| | Sbjct 121387 TGCGATGATTCTATTCTTCATGTTGTCTGA-CCATAGTCCCATATCAACAAGATCCTTCA 121445 Query 78485 CCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGG 78544 || |||| | | |||||| || || || || || ||||||||||| Sbjct 121446 ACAACCATGGGTTGACGACTTGGAACTCTCCAGCGAGCACACGACGAGAGTAGATGTTGG 121505 Query 78545 TCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCA 78604 ||||| |||||||| |||||| ||| | || || ||| ||| || |||| Sbjct 121506 AGGTGTATGGCTCGAAGCATTCGTTGAACCCAAGAATTTGACTGGTACTGGCAGTGGGCA 121565 Query 78605 TGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAGGCCGT 78664 | || || || || | | || || | ||||| |||||| | ||| || | Sbjct 121566 TAGGAGCAACAAGCAAACTGTTGCGGATACCATATTGCTTGATTTGTTGCTTCAGAGAAT 121625 Query 78665 CCCAA------AATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGG 78718 ||||| | ||| | | | || |||||||| || |||||| ||||| | Sbjct 121626 CCCAATCCCAGAGATCAGTTGGAGTGACACCCCACATATCGTATTGAAGCTCACCCTTCG 121685 Query 78719 ACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACT 78778 | | || || |||| | | |||||||| | ||| || ||| ||||| || || Sbjct 121686 AGACTGGAGATCCCTCGTATGTCTCGTATGGTCCAAGCTTCTTAGCGAGATCAACGGAAG 121745 Query 78779 CGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTT-G 78837 | || || |||||||| | || ||| ||||| ||||||| | |||| | Sbjct 121746 CAGTCAAAGCGGCGTGGTAGATAGTCTCAAAGATCTGGATGTTGAGATGCTTGGCCTCAG 121805 Query 78838 GTCTCGTCGAACGAAAG--GCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGA 78895 || | ||||| | || || |||| || ||||||||| || || || || || || | Sbjct 121806 GTGAC-TCGAATGGCAGACGCAGAGC--CAAGAAGACATCAGCAAGACCTTGAACACCAA 121862 Query 78896 TAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTC-GGGTAAAAGTTC 78954 ||| || |||| ||| || | |||| |||| | || | | ||||| |||| Sbjct 121863 GAGCAATAGGTCTGTGACGGAAGTTGGA-TTTCTTTGCTTCTGGAACTGGGTAGTAGTTG 121921 Query 78955 CGATCGATGACGCGGTTCAGGTTACGCGTGACGACC-CGAGTCA--CCTCGTACAATTTG 79011 ||||||| ||||||||| | |||| || | | || |||||| | || Sbjct 121922 ACCTCGATGATCTTGTTCAGGTT---CTTGACCACAACCTGGCAGACCTCGTGGAGCTTC 121978 Query 79012 GCGAAATCAAAATGATTTCCTT--TGATG--AAAGTCGGTAGGCACAGC----GATGCCA 79063 ||| ||| | | | | || | ||| || || ||| || | || ||||||| Sbjct 121979 TGGAAGTCATA--GGTACCGTTGTTCATGTCAACGTAGGTGGGAAGCGCCATGGATGCCA 122036 Query 79064 GGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAG 79123 ||| || || ||| || || || ||||| || || ||||||| || | Sbjct 122037 AGTTACAGCAAGCGACCTCATCTGGTGCGGAGTACTCGACAATCTCAGTGCACAGGTTGG 122096 Query 79124 ACGACTTGA-TGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAG 79182 | | | || |||| |||| ||||||||||||||||| ||| || || ||||||||| Sbjct 122097 A-GCTTCGAATGGTACCGAGATTCTTCTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAG 122155 Query 79183 CACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGG 79242 |||| | || | || ||||| || | ||||| | || ||| | | | | Sbjct 122156 AGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCGAGAATGGAGTACCAAAGTTTCTGT 122215 Query 79243 GCCCGGACAACCTTCTTGT-ACCGA--CCCTGTGCGACGTACGTCCGGTACAACTCGTTG 79299 ||| || ||||| ||| |||| || | ||| || ||| | | | | Sbjct 122216 GCCTTGATGG---TCTTGCGACCCTTGCCCTCAGCCTCATACTTCTCGTATAGAGCCTCG 122272 Query 79300 AAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCA- 79358 || | || ||||||||||| | || || |||||||||| ||||||||||| ||| Sbjct 122273 AATTCATCACCATAGACATCTGCAAGACCTGGGCACTCGTTGGGGCACATCAGTGTCCAT 122332 Query 79359 GTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAG 79418 || | | | ||| ||||| || |||||| || || |||||||| || || |||||| Sbjct 122333 GTGC-CATTCTTTTCAACACGCTTCATGAACAGATCTGGGATCCAGAGAGCGTAGAAGAG 122391 Query 79419 GTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGAT 79478 || || || | || || | ||| || || || || || || | || | | Sbjct 122392 ATCACGAGCGCGAACTTCTTCCTTGCCGTGATTTTTTCGGAGATCAAGGTACTCGAAAAC 122451 Query 79479 GTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTG 79538 || |||||||| ||||| || ||||||||||| | ||| |||||| || ||||| Sbjct 122452 ATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGTCGCTTGTTTCCACCCTG 122511 Query 79539 GTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGAC 79598 || || || | ||| ||||||||||| |||| |||||| || ||||| |||| || | Sbjct 122512 GTCAACATATCTGGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATACCGTTGGAGTT 122571 Query 79599 GCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGAT 79658 |||||| || || || | ||| | || ||||| | | | || ||||| Sbjct 122572 GCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTCGAATTCTGTGGACATTGAGACCGAT 122631 Query 79659 GCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGAT 79718 || || | ||| ||||| || || ||||||||| |||||||| || || || Sbjct 122632 ACCACCAGCATTCTTAGAGATCATGGCACAAGTCTTGAGCGTGTCGTAGATACCATCAAT 122691 Query 79719 CGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGT-TGTTCGTACCGG 79777 || |||||||| | | | |||||| || | |||| | || | || |||| Sbjct 122692 ACTATCATCCTTCATGTCAATTAAGAAGCACGAAGAAAGTTGTGCCTGTGGT-GTGCCGG 122750 Query 79778 CGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCT--CATCAGATCGTACGT 79835 | |||||| || |||| ||||| |||||| | |||| || |||||| | || || Sbjct 122751 CAGCGAAGAGTGTTGGCGAAGCGTGTGTGAAGTA--TTTGCCTGACATCAGGTTATATGT 122808 Query 79836 CTC-CTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGT 79894 ||| ||| || | || || |||||||| ||||| || || || ||||||| | || Sbjct 122809 CTCAATTGCTGC-CTCGATATCCTCGCCGTGAATGCCAACTGCTACACGCATGATCATGT 122867 Query 79895 ACTG-GGGCGTCTCGCCGA 79912 ||| |||||| |||| || Sbjct 122868 GCTGCGGGCGT-TCGCAGA 122885 Score = 176 bits (194), Expect = 5e-39 Identities = 404/604 (67%), Gaps = 16/604 (3%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||||| || || || ||||| || ||||| || || ||| | Sbjct 122874 CCGCAGCACATGATCATGCGTGTAGCAGTTGGCATTCACGGCGAGGATATC----GAGGC 122819 Query 19163 CGC----GAGACATACGACCTGATGAGCCAG--AAGTTCTTCACGCACGCGACGCCGACC 19216 || |||||||| |||||||| ||| || | |||||| ||||| |||| || Sbjct 122818 AGCAATTGAGACATATAACCTGATGT--CAGGCAAATACTTCACACACGCTTCGCCAACA 122761 Query 19217 CTTTTCAACGCCGGTACGAACAACCCGCAGA--TGTCGAGCTGTTTCCTAGTGGCTATGA 19274 || ||| ||||| || || || ||| | | || || ||| || | | |||| Sbjct 122760 CTCTTCGCTGCCGGCAC--ACCACAGGCACAACTTTCTTCGTGCTTCTTAATTGACATGA 122703 Query 19275 AGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGT 19334 ||||||| || ||||| || |||||||| ||||||||| || || ||||| ||| Sbjct 122702 AGGATGATAGTATTGATGGTATCTACGACACGCTCAAGACTTGTGCCATGATCTCTAAGA 122643 Query 19335 GGTCCGGGGGTATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATG 19394 | || |||||||| || | | | || || | | || | || || Sbjct 122642 ATGCTGGTGGTATCGGTCTCAATGTCCACAGAATTCGAGCCACCGGAGCTTACATTGCTG 122583 Query 19395 GGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCA 19454 | || ||||| || |||||||||| || |||||| | || ||||||||||| |||| Sbjct 122582 GCACAAACGGCAACTCCAACGGTATCGTTCCTATGCTCAGAGTGTTCAACAACACTGCCA 122523 Query 19455 GGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCAT 19514 | || || ||||||| || ||| || || | |||||||||||||||||||||| Sbjct 122522 GATATGTTGACCAGGGTGGAAACAAGCGACCTGGTGCATTCGCCATCTACCTCGAGCCAT 122463 Query 19515 GGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGC 19574 ||||||| || || | || | ||| || || || || || || | || || | | Sbjct 122462 GGCACGCAGATGTTTTCGAGTACCTTGATCTCCGAAAAAATCACGGCAAGGAAGAAGTTC 122403 Query 19575 GCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGA 19634 || ||| || |||||| || | ||||| || || || |||||| || ||||| | Sbjct 122402 GCGCTCGTGATCTCTTCTACGCTCTCTGGATCCCAGATCTGTTCATGAAGCGTGTTGAAA 122343 Query 19635 AGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACG 19694 || | | |||| ||||||||||| |||| ||||| || || | || ||||| | Sbjct 122342 AGAATGGCACATGGACACTGATGTGCCCCAACGAGTGCCCAGGTCTTGCAGATGTCTATG 122283 Query 19695 GCGA 19698 | || Sbjct 122282 GTGA 122279 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 20616 ACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGG 20675 || |||||| | |||| |||||| ||||||||| | ||| | |||| || | |||| Sbjct 121346 ACATCAAGGCTCTCTACAAGACCGTCTGGGAAATCTCTCAGCGTACCATCGTCCAGATGG 121287 Query 20676 CGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATC 20735 | |||||||| || || ||||| || || || || || | || || |||| || ||| Sbjct 121286 CTGCCGATCGTGGTGCTTACATTGATCAATCTCAATCAATGAACATCCACATGAAGGATC 121227 Query 20736 CGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGG 20795 | | ||| ||| | | | |||||| | || ||| | ||| |||||||| | Sbjct 121226 CTACAATGGGCAAGATCACCAGTATGCATTTTGCAGGTTGGAAGTTGGGCCTCAAGACTG 121167 Query 20796 GCATGTACTATCTGCGGAC 20814 | ||||||||||| || || Sbjct 121166 GGATGTACTATCTCCGAAC 121148 >seq887 Length=503426 Score = 114 bits (126), Expect = 1e-20 Identities = 307/457 (67%), Gaps = 18/457 (4%) Strand=Plus/Plus Query 59971 CATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGT 60030 ||||||| || || | | || || || ||| || || ||||||||| ||| || | Sbjct 202053 CATTTGCTCAGCGCTTGGTTGCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCAT 202112 Query 60031 TCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACG 60090 || |||| |||||| | || ||||||||||||||| | || || | |||||||||| Sbjct 202113 TCGCCTCTATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAACG 202172 Query 60091 AGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACAC 60149 || | ||||| || |||||||| || || || ||||| || | |||| || ||| Sbjct 202173 AGTTAATTTCTCGTGACGAGGGTCTTCACACTGACTTTGC-TTGCCTCCTCTTCTCTCAC 202231 Query 60150 CTATTGGAAAAATGCCCTTCCAAGGA--TATTCACAAGAT-TGTTCAGTG-GGCTTGTGA 60205 ||| | | |||| |||| | | | |||||| | ||| || |||| ||| Sbjct 202232 ---TTGAAGCATCGCCCAAGCAAGCAAGCAGT-TCAAGATGTCATCACTGAGGCTGTTGA 202287 Query 60206 AGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGG 60265 | | ||| ||||| | || || || ||||| || || | || ||| || | Sbjct 202288 AATCGAGCAGGAGTTTTTGACCGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACTCCAA 202347 Query 60266 AGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG---CCTCATGGCCCAGTTTGGAGA 60322 |||| ||| |||||| ||||||| || || || ||| | |||| |||| | Sbjct 202348 CCTGATGAAGCAATACATTGAGTTTGTTGCTGATCGTCTTCTCCTTGCCC---TTGG-CA 202403 Query 60323 AGGACCAA-TTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAG 60381 | ||| || | ||| ||||| ||||||| ||||||| |||||| | | | Sbjct 202404 ACGACAAAGTCTACAAATCTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCG 202463 Query 60382 GGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 | ||||| ||||||||||||||||| || || ||||| Sbjct 202464 GCAAGACAAACTTCTTTGAGAAGCGTGTTGGTGATTA 202500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548518457682000