Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq411 201 1e-46
seq887 114 1e-20
>seq411
Length=256942
Score = 201 bits (222), Expect = 1e-46
Identities = 1121/1759 (64%), Gaps = 55/1759 (3%)
Strand=Plus/Plus
Query 78189 TGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACT 78248
|||||| | ||||||||| || |||||||| ||| |||||| || | ||||||||
Sbjct 121147 TGTTCGGAGATAGTACATCCCAGTCTTGAGGCCCAACTTCCAACCTGCAAAATGCATACT 121206
Query 78249 CGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGAT 78308
| | |||| ||| | || | || |||| |||||| | || || || || || ||
Sbjct 121207 GGTGATCTTGCCCATTGTAGGATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAAT 121266
Query 78309 GTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGT 78368
||| ||||| || ||||| ||||| | || || | || | || ||||||| |||
Sbjct 121267 GTAAGCACCACGATCGGCAGCCATCTGGACGATGGTACGCTGAGAGATTTCCCAGACGGT 121326
Query 78369 CCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTACGCTC---CCACCGGC 78425
| ||| | ||||| | || | | |||| | | | | || ||||| |
Sbjct 121327 CTTGTAGAGAGCCTTGATGTCAGCTGGAATGTTAGGAACATTTTGAATCGAACCACCATC 121386
Query 78426 TCGCACAATTTCATTCTTAAT-TTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCGGA 78484
| | ||| |||||| || ||| | ||| | || | ||||||| |
Sbjct 121387 TGCGATGATTCTATTCTTCATGTTGTCTGA-CCATAGTCCCATATCAACAAGATCCTTCA 121445
Query 78485 CCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGG 78544
|| |||| | | |||||| || || || || || |||||||||||
Sbjct 121446 ACAACCATGGGTTGACGACTTGGAACTCTCCAGCGAGCACACGACGAGAGTAGATGTTGG 121505
Query 78545 TCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCA 78604
||||| |||||||| |||||| ||| | || || ||| ||| || ||||
Sbjct 121506 AGGTGTATGGCTCGAAGCATTCGTTGAACCCAAGAATTTGACTGGTACTGGCAGTGGGCA 121565
Query 78605 TGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAGGCCGT 78664
| || || || || | | || || | ||||| |||||| | ||| || |
Sbjct 121566 TAGGAGCAACAAGCAAACTGTTGCGGATACCATATTGCTTGATTTGTTGCTTCAGAGAAT 121625
Query 78665 CCCAA------AATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGG 78718
||||| | ||| | | | || |||||||| || |||||| ||||| |
Sbjct 121626 CCCAATCCCAGAGATCAGTTGGAGTGACACCCCACATATCGTATTGAAGCTCACCCTTCG 121685
Query 78719 ACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACT 78778
| | || || |||| | | |||||||| | ||| || ||| ||||| || ||
Sbjct 121686 AGACTGGAGATCCCTCGTATGTCTCGTATGGTCCAAGCTTCTTAGCGAGATCAACGGAAG 121745
Query 78779 CGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTT-G 78837
| || || |||||||| | || ||| ||||| ||||||| | |||| |
Sbjct 121746 CAGTCAAAGCGGCGTGGTAGATAGTCTCAAAGATCTGGATGTTGAGATGCTTGGCCTCAG 121805
Query 78838 GTCTCGTCGAACGAAAG--GCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGA 78895
|| | ||||| | || || |||| || ||||||||| || || || || || || |
Sbjct 121806 GTGAC-TCGAATGGCAGACGCAGAGC--CAAGAAGACATCAGCAAGACCTTGAACACCAA 121862
Query 78896 TAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTC-GGGTAAAAGTTC 78954
||| || |||| ||| || | |||| |||| | || | | ||||| ||||
Sbjct 121863 GAGCAATAGGTCTGTGACGGAAGTTGGA-TTTCTTTGCTTCTGGAACTGGGTAGTAGTTG 121921
Query 78955 CGATCGATGACGCGGTTCAGGTTACGCGTGACGACC-CGAGTCA--CCTCGTACAATTTG 79011
||||||| ||||||||| | |||| || | | || |||||| | ||
Sbjct 121922 ACCTCGATGATCTTGTTCAGGTT---CTTGACCACAACCTGGCAGACCTCGTGGAGCTTC 121978
Query 79012 GCGAAATCAAAATGATTTCCTT--TGATG--AAAGTCGGTAGGCACAGC----GATGCCA 79063
||| ||| | | | | || | ||| || || ||| || | || |||||||
Sbjct 121979 TGGAAGTCATA--GGTACCGTTGTTCATGTCAACGTAGGTGGGAAGCGCCATGGATGCCA 122036
Query 79064 GGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAG 79123
||| || || ||| || || || ||||| || || ||||||| || |
Sbjct 122037 AGTTACAGCAAGCGACCTCATCTGGTGCGGAGTACTCGACAATCTCAGTGCACAGGTTGG 122096
Query 79124 ACGACTTGA-TGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAG 79182
| | | || |||| |||| ||||||||||||||||| ||| || || |||||||||
Sbjct 122097 A-GCTTCGAATGGTACCGAGATTCTTCTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAG 122155
Query 79183 CACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGG 79242
|||| | || | || ||||| || | ||||| | || ||| | | | |
Sbjct 122156 AGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCGAGAATGGAGTACCAAAGTTTCTGT 122215
Query 79243 GCCCGGACAACCTTCTTGT-ACCGA--CCCTGTGCGACGTACGTCCGGTACAACTCGTTG 79299
||| || ||||| ||| |||| || | ||| || ||| | | | |
Sbjct 122216 GCCTTGATGG---TCTTGCGACCCTTGCCCTCAGCCTCATACTTCTCGTATAGAGCCTCG 122272
Query 79300 AAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCA- 79358
|| | || ||||||||||| | || || |||||||||| ||||||||||| |||
Sbjct 122273 AATTCATCACCATAGACATCTGCAAGACCTGGGCACTCGTTGGGGCACATCAGTGTCCAT 122332
Query 79359 GTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAG 79418
|| | | | ||| ||||| || |||||| || || |||||||| || || ||||||
Sbjct 122333 GTGC-CATTCTTTTCAACACGCTTCATGAACAGATCTGGGATCCAGAGAGCGTAGAAGAG 122391
Query 79419 GTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGAT 79478
|| || || | || || | ||| || || || || || || | || | |
Sbjct 122392 ATCACGAGCGCGAACTTCTTCCTTGCCGTGATTTTTTCGGAGATCAAGGTACTCGAAAAC 122451
Query 79479 GTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTG 79538
|| |||||||| ||||| || ||||||||||| | ||| |||||| || |||||
Sbjct 122452 ATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATGCACCAGGTCGCTTGTTTCCACCCTG 122511
Query 79539 GTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGAC 79598
|| || || | ||| ||||||||||| |||| |||||| || ||||| |||| || |
Sbjct 122512 GTCAACATATCTGGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATACCGTTGGAGTT 122571
Query 79599 GCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGAT 79658
|||||| || || || | ||| | || ||||| | | | || |||||
Sbjct 122572 GCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTCGAATTCTGTGGACATTGAGACCGAT 122631
Query 79659 GCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGAT 79718
|| || | ||| ||||| || || ||||||||| |||||||| || || ||
Sbjct 122632 ACCACCAGCATTCTTAGAGATCATGGCACAAGTCTTGAGCGTGTCGTAGATACCATCAAT 122691
Query 79719 CGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGT-TGTTCGTACCGG 79777
|| |||||||| | | | |||||| || | |||| | || | || ||||
Sbjct 122692 ACTATCATCCTTCATGTCAATTAAGAAGCACGAAGAAAGTTGTGCCTGTGGT-GTGCCGG 122750
Query 79778 CGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCT--CATCAGATCGTACGT 79835
| |||||| || |||| ||||| |||||| | |||| || |||||| | || ||
Sbjct 122751 CAGCGAAGAGTGTTGGCGAAGCGTGTGTGAAGTA--TTTGCCTGACATCAGGTTATATGT 122808
Query 79836 CTC-CTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGT 79894
||| ||| || | || || |||||||| ||||| || || || ||||||| | ||
Sbjct 122809 CTCAATTGCTGC-CTCGATATCCTCGCCGTGAATGCCAACTGCTACACGCATGATCATGT 122867
Query 79895 ACTG-GGGCGTCTCGCCGA 79912
||| |||||| |||| ||
Sbjct 122868 GCTGCGGGCGT-TCGCAGA 122885
Score = 176 bits (194), Expect = 5e-39
Identities = 404/604 (67%), Gaps = 16/604 (3%)
Strand=Plus/Minus
Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162
|| ||| || | ||||||| || || || ||||| || ||||| || || ||| |
Sbjct 122874 CCGCAGCACATGATCATGCGTGTAGCAGTTGGCATTCACGGCGAGGATATC----GAGGC 122819
Query 19163 CGC----GAGACATACGACCTGATGAGCCAG--AAGTTCTTCACGCACGCGACGCCGACC 19216
|| |||||||| |||||||| ||| || | |||||| ||||| |||| ||
Sbjct 122818 AGCAATTGAGACATATAACCTGATGT--CAGGCAAATACTTCACACACGCTTCGCCAACA 122761
Query 19217 CTTTTCAACGCCGGTACGAACAACCCGCAGA--TGTCGAGCTGTTTCCTAGTGGCTATGA 19274
|| ||| ||||| || || || ||| | | || || ||| || | | ||||
Sbjct 122760 CTCTTCGCTGCCGGCAC--ACCACAGGCACAACTTTCTTCGTGCTTCTTAATTGACATGA 122703
Query 19275 AGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGT 19334
||||||| || ||||| || |||||||| ||||||||| || || ||||| |||
Sbjct 122702 AGGATGATAGTATTGATGGTATCTACGACACGCTCAAGACTTGTGCCATGATCTCTAAGA 122643
Query 19335 GGTCCGGGGGTATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATG 19394
| || |||||||| || | | | || || | | || | || ||
Sbjct 122642 ATGCTGGTGGTATCGGTCTCAATGTCCACAGAATTCGAGCCACCGGAGCTTACATTGCTG 122583
Query 19395 GGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCA 19454
| || ||||| || |||||||||| || |||||| | || ||||||||||| ||||
Sbjct 122582 GCACAAACGGCAACTCCAACGGTATCGTTCCTATGCTCAGAGTGTTCAACAACACTGCCA 122523
Query 19455 GGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCAT 19514
| || || ||||||| || ||| || || | ||||||||||||||||||||||
Sbjct 122522 GATATGTTGACCAGGGTGGAAACAAGCGACCTGGTGCATTCGCCATCTACCTCGAGCCAT 122463
Query 19515 GGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGC 19574
||||||| || || | || | ||| || || || || || || | || || | |
Sbjct 122462 GGCACGCAGATGTTTTCGAGTACCTTGATCTCCGAAAAAATCACGGCAAGGAAGAAGTTC 122403
Query 19575 GCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGA 19634
|| ||| || |||||| || | ||||| || || || |||||| || ||||| |
Sbjct 122402 GCGCTCGTGATCTCTTCTACGCTCTCTGGATCCCAGATCTGTTCATGAAGCGTGTTGAAA 122343
Query 19635 AGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACG 19694
|| | | |||| ||||||||||| |||| ||||| || || | || ||||| |
Sbjct 122342 AGAATGGCACATGGACACTGATGTGCCCCAACGAGTGCCCAGGTCTTGCAGATGTCTATG 122283
Query 19695 GCGA 19698
| ||
Sbjct 122282 GTGA 122279
Score = 84.2 bits (92), Expect = 2e-11
Identities = 138/199 (69%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 20616 ACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGG 20675
|| |||||| | |||| |||||| ||||||||| | ||| | |||| || | ||||
Sbjct 121346 ACATCAAGGCTCTCTACAAGACCGTCTGGGAAATCTCTCAGCGTACCATCGTCCAGATGG 121287
Query 20676 CGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATC 20735
| |||||||| || || ||||| || || || || || | || || |||| || |||
Sbjct 121286 CTGCCGATCGTGGTGCTTACATTGATCAATCTCAATCAATGAACATCCACATGAAGGATC 121227
Query 20736 CGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGG 20795
| | ||| ||| | | | |||||| | || ||| | ||| |||||||| |
Sbjct 121226 CTACAATGGGCAAGATCACCAGTATGCATTTTGCAGGTTGGAAGTTGGGCCTCAAGACTG 121167
Query 20796 GCATGTACTATCTGCGGAC 20814
| ||||||||||| || ||
Sbjct 121166 GGATGTACTATCTCCGAAC 121148
>seq887
Length=503426
Score = 114 bits (126), Expect = 1e-20
Identities = 307/457 (67%), Gaps = 18/457 (4%)
Strand=Plus/Plus
Query 59971 CATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGT 60030
||||||| || || | | || || || ||| || || ||||||||| ||| || |
Sbjct 202053 CATTTGCTCAGCGCTTGGTTGCATTCGCCGCCGTTGAGGGTATCTTCTTCAGTGGTTCAT 202112
Query 60031 TCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACG 60090
|| |||| |||||| | || ||||||||||||||| | || || | ||||||||||
Sbjct 202113 TCGCCTCTATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCCGGACTTACCTTCTCCAACG 202172
Query 60091 AGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACAC 60149
|| | ||||| || |||||||| || || || ||||| || | |||| || |||
Sbjct 202173 AGTTAATTTCTCGTGACGAGGGTCTTCACACTGACTTTGC-TTGCCTCCTCTTCTCTCAC 202231
Query 60150 CTATTGGAAAAATGCCCTTCCAAGGA--TATTCACAAGAT-TGTTCAGTG-GGCTTGTGA 60205
||| | | |||| |||| | | | |||||| | ||| || |||| |||
Sbjct 202232 ---TTGAAGCATCGCCCAAGCAAGCAAGCAGT-TCAAGATGTCATCACTGAGGCTGTTGA 202287
Query 60206 AGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGG 60265
| | ||| ||||| | || || || ||||| || || | || ||| || |
Sbjct 202288 AATCGAGCAGGAGTTTTTGACCGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACTCCAA 202347
Query 60266 AGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG---CCTCATGGCCCAGTTTGGAGA 60322
|||| ||| |||||| ||||||| || || || ||| | |||| |||| |
Sbjct 202348 CCTGATGAAGCAATACATTGAGTTTGTTGCTGATCGTCTTCTCCTTGCCC---TTGG-CA 202403
Query 60323 AGGACCAA-TTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAG 60381
| ||| || | ||| ||||| ||||||| ||||||| |||||| | | |
Sbjct 202404 ACGACAAAGTCTACAAATCTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTTGCCG 202463
Query 60382 GGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418
| ||||| ||||||||||||||||| || || |||||
Sbjct 202464 GCAAGACAAACTTCTTTGAGAAGCGTGTTGGTGATTA 202500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548518457682000
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