Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq411 179 4e-40 >seq411 Length=256942 Score = 179 bits (198), Expect = 4e-40 Identities = 476/713 (67%), Gaps = 22/713 (3%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATG--AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 |||||| || || | ||| || |||| ||||| || ||||| ||||||| || ||| Sbjct 122812 TGAGACATATAACCTGATGTCAGGCAAA--TACTTCACACACGCTTCGCCAACACTCTTC 122755 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 || || || || | || | || |||||| | | | ||||||||||| Sbjct 122754 GCTGCCGGCACACCACAGGCACAACTTTCTTCGTGCTTCTTAATTGACATGAAGGATGAT 122695 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 || || || |||||||| ||||||||| |||||| ||||| ||| | ||| Sbjct 122694 AGTATTGATGGTATCTACGACACGCTCAAGACTTGTGCCATGATCTCTAAGAATGCTGGT 122635 Query 53420 GGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 ||||||||| || | | | | ||| | || || | ||| | || || || | Sbjct 122634 GGTATCGGTCTCAATGTCCACAGAA--TTCGAGCCACCGGAGCTTACATTGCTGGCACAA 122577 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 ||||| | || | || ||||| ||||||||| | || ||||||||||| ||| | || | Sbjct 122576 ACGGCAACTCCAACGGTATCGTTCCTATGCTCAGAGTGTTCAACAACACTGCCAGATATG 122517 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 | |||||||||| ||||| || | |||||||||||||||||||| ||||||| Sbjct 122516 TTGACCAGGGTGGAAACAAGCGACCTGGTGCATTCGCCATCTACCTCGAGCCATGGCACG 122457 Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657 | || || | |||| || || || || ||||| || | ||||| | ||| | Sbjct 122456 CAGATGTTTTCGAGTACCTTGATCTCCGAAAAAATCACGGCAAGGAAGAAGTTCGCGCTC 122397 Query 53658 GTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGAC 53716 |||| || || ||| ||||| ||||| || || || |||||| | || || ||| | Sbjct 122396 GTGATCTCTTCTAC-GCTCTCTGGATCCCAGATCTGTTCATGAAGCGTGTTGAAAAGAAT 122338 Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAG 53776 | ||| ||||||||||| ||||||||||| || || | |||||| ||||| Sbjct 122337 GGCACATGGACACTGATGTGCCCCAACGAGTGCCCAGGTCTTGCAGATGTCTATGGTGAT 122278 Query 53777 GAGTTTAACGA-GATGTAT-CG-GACGTACGCAGTTCAGGGC---CGCTACAAGAAGAAG 53830 || || ||| | | ||| || || ||| | | | ||||| | ||||| | Sbjct 122277 GAATT---CGAGGCTCTATACGAGAAGTATGAGGCTGAGGGCAAGGGTCGCAAGACCA-- 122223 Query 53831 GTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCG 53890 ||||||| | | | ||| | | || ||| | ||| ||||| |||| || Sbjct 122222 -TCAAGGCACAGAAACTTTGGTACTCCATTCTCGAAGCCCAAACCGAGACTGGAAACCCC 122164 Query 53891 TACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 | |||| |||||||||| | |||| ||||||||||||||||| |||| Sbjct 122163 TTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGCAACCAGAAGAATCTCGG 122111 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 ||| ||||||||||| ||||| || || || || || |||||||| |||| || |||| Sbjct 121285 TGCCGATCGTGGTGCTTACATTGATCAATCTCAATCAATGAACATCCACATGAAGGATCC 121226 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | || ||| |||| | | | ||||| ||| || |||||| ||| |||||||| || Sbjct 121225 TACAATGGGCAAGATCACCAGTATGCATTTTGCAGGTTGGAAGTTGGGCCTCAAGACTGG 121166 Query 55906 TATGTACTATCTGCGGAC 55923 ||||||||||| || || Sbjct 121165 GATGTACTATCTCCGAAC 121148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209672815000