Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq411 179 4e-40
>seq411
Length=256942
Score = 179 bits (198), Expect = 4e-40
Identities = 476/713 (67%), Gaps = 22/713 (3%)
Strand=Plus/Minus
Query 53242 TGAGACGTACGACTTAATG--AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299
|||||| || || | ||| || |||| ||||| || ||||| ||||||| || |||
Sbjct 122812 TGAGACATATAACCTGATGTCAGGCAAA--TACTTCACACACGCTTCGCCAACACTCTTC 122755
Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359
|| || || || | || | || |||||| | | | |||||||||||
Sbjct 122754 GCTGCCGGCACACCACAGGCACAACTTTCTTCGTGCTTCTTAATTGACATGAAGGATGAT 122695
Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419
|| || || |||||||| ||||||||| |||||| ||||| ||| | |||
Sbjct 122694 AGTATTGATGGTATCTACGACACGCTCAAGACTTGTGCCATGATCTCTAAGAATGCTGGT 122635
Query 53420 GGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477
||||||||| || | | | | ||| | || || | ||| | || || || |
Sbjct 122634 GGTATCGGTCTCAATGTCCACAGAA--TTCGAGCCACCGGAGCTTACATTGCTGGCACAA 122577
Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537
||||| | || | || ||||| ||||||||| | || ||||||||||| ||| | || |
Sbjct 122576 ACGGCAACTCCAACGGTATCGTTCCTATGCTCAGAGTGTTCAACAACACTGCCAGATATG 122517
Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597
| |||||||||| ||||| || | |||||||||||||||||||| |||||||
Sbjct 122516 TTGACCAGGGTGGAAACAAGCGACCTGGTGCATTCGCCATCTACCTCGAGCCATGGCACG 122457
Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657
| || || | |||| || || || || ||||| || | ||||| | ||| |
Sbjct 122456 CAGATGTTTTCGAGTACCTTGATCTCCGAAAAAATCACGGCAAGGAAGAAGTTCGCGCTC 122397
Query 53658 GTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGAC 53716
|||| || || ||| ||||| ||||| || || || |||||| | || || ||| |
Sbjct 122396 GTGATCTCTTCTAC-GCTCTCTGGATCCCAGATCTGTTCATGAAGCGTGTTGAAAAGAAT 122338
Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAG 53776
| ||| ||||||||||| ||||||||||| || || | |||||| |||||
Sbjct 122337 GGCACATGGACACTGATGTGCCCCAACGAGTGCCCAGGTCTTGCAGATGTCTATGGTGAT 122278
Query 53777 GAGTTTAACGA-GATGTAT-CG-GACGTACGCAGTTCAGGGC---CGCTACAAGAAGAAG 53830
|| || ||| | | ||| || || ||| | | | ||||| | ||||| |
Sbjct 122277 GAATT---CGAGGCTCTATACGAGAAGTATGAGGCTGAGGGCAAGGGTCGCAAGACCA-- 122223
Query 53831 GTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCG 53890
||||||| | | | ||| | | || ||| | ||| ||||| |||| ||
Sbjct 122222 -TCAAGGCACAGAAACTTTGGTACTCCATTCTCGAAGCCCAAACCGAGACTGGAAACCCC 122164
Query 53891 TACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943
| |||| |||||||||| | |||| ||||||||||||||||| ||||
Sbjct 122163 TTCATGCTCTACAAGGATGCTTGCAACCGAAAGAGCAACCAGAAGAATCTCGG 122111
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
||| ||||||||||| ||||| || || || || || |||||||| |||| || ||||
Sbjct 121285 TGCCGATCGTGGTGCTTACATTGATCAATCTCAATCAATGAACATCCACATGAAGGATCC 121226
Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905
| || ||| |||| | | | ||||| ||| || |||||| ||| |||||||| ||
Sbjct 121225 TACAATGGGCAAGATCACCAGTATGCATTTTGCAGGTTGGAAGTTGGGCCTCAAGACTGG 121166
Query 55906 TATGTACTATCTGCGGAC 55923
||||||||||| || ||
Sbjct 121165 GATGTACTATCTCCGAAC 121148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547209672815000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |