Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq411 210 2e-49 seq112 188 8e-43 seq61 178 1e-39 seq190 134 2e-26 seq268 82.4 9e-11 >seq411 Length=256942 Score = 210 bits (232), Expect = 2e-49 Identities = 806/1244 (65%), Gaps = 39/1244 (3%) Strand=Plus/Plus Query 80538 ACCCCACATGTCGTGCTGCAAGATG-CCCTCCGACGCCGGAGACCCCGCGAACGTCTCGT 80596 ||||||||| |||| || ||| | |||| ||| | ||||| ||| || | ||||||| Sbjct 121654 ACCCCACATATCGTATTG-AAGCTCACCCTTCGAGACTGGAGATCCCTCGTATGTCTCGT 121712 Query 80597 ACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACT 80656 | || || | |||| || || ||| || | | | || ||||| || || || Sbjct 121713 ATGGTCCAAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAGTCT 121772 Query 80657 CAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCA 80716 |||||| |||| | | |||| || ||||| | || | || || Sbjct 121773 CAAAGATCTGGATGTTGAGATGCTTGGCCTCAGGTGACTCGAATGGCAGACGCAGAGCCA 121832 Query 80717 TGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATC 80776 ||| || ||||| || || ||||| || | || || || | ||| || ||| ||| Sbjct 121833 AGAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAGTTGGATT 121892 Query 80777 GCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA- 80835 || || || |||| |||||| |||| ||||||| ||||||||| | || Sbjct 121893 TCTTTGCTTCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTT-CTTGACC 121951 Query 80836 ACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCT--TCA---CAA 80890 |||||| | || || || || ||||| ||||| || ||| || | ||| ||| Sbjct 121952 ACAACCTGGCAGACCTCGTGGAGCTTCTGGAAGTC--ATAGGTACCGTTGTTCATGTCAA 122009 Query 80891 ---ATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAA 80947 | | ||||| || ||| |||| || || || ||||| || | | | Sbjct 122010 CGTAGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGCGGAGT 122069 Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTT--AATTGTACCCAGGTTTTTCTGGTT 81005 ||||||| || || ||||||| || || ||| ||| ||||| || || |||||||| Sbjct 122070 ACTCGACAATCTCAGTGCACAGGTTGGAG--CTTCGAATGGTACCGAGATTCTTCTGGTT 122127 Query 81006 TGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGA 81065 ||| ||||||||| ||||||||| |||| | ||| | || |||||| || | Sbjct 122128 GCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGC 122187 Query 81066 CTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGC 81125 | ||| |||| || ||||| | | ||||||| |||||| ||||| || || Sbjct 122188 TTCGAGAATGGAGTACCAAAGTTTCTGTGCCTTGATGGTCTTGCGACCCTTGCCCTCAGC 122247 Query 81126 CACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCA 81185 | ||||||| |||| | ||||| | |||| | | || | || ||||||| Sbjct 122248 CTCATACTTCTCGTATAGAGCCTCGAATTCATCACCATAGACATCTGCAAGACCTGGGCA 122307 Query 81186 CTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGC---CTTCATGAAAGC 81242 |||||| ||||||||||| ||| ||| | |||| | || | ||||||||| Sbjct 122308 CTCGTTGGGGCACATCAGTGTCCAT---GTGCCATTCTTTTCAACACGCTTCATGAACAG 122364 Query 81243 GTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGG 81300 || ||||||||||| ||| ||| || || || |||||| | || || | || || Sbjct 122365 ATCTGGGATCCAGAGAGCGTAGAAGAGATCACG--AGCGCGAACTTCTTCCTTGCCGTGA 122422 Query 81301 TTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCG 81360 || || | || || | || | | || || ||||||||||| || || | |||| Sbjct 122423 TTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCG 122482 Query 81361 ATCGACCCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACA 81417 | | || || | |||||||||| || || | |||||| ||| || || Sbjct 122483 AATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAACACT 122542 Query 81418 CGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTG 81477 | | |||||| | |||||| | || | ||||| || || | || | || || Sbjct 122543 CTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTG 122602 Query 81478 GCGCGCACCTTGCTGA--TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCAC 81535 || || | || || |||| ||||||| ||||| | ||| || ||| |||| Sbjct 122603 GCTCGAATTCTGTGGACATTGA--GACCGATACCACCAGCATTCTTAGAGATCATGGCAC 122660 Query 81536 ACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAAC 81595 | || | || || || || || || || ||||| | |||||||||| ||||| | Sbjct 122661 AAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAATTAAGAAGC 122720 Query 81596 AGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGA 81655 | || | || | | || ||||||| ||| |||||||| | ||||| ||| Sbjct 122721 ACGAAGAAAGTTGTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTGA 122780 Query 81656 AATAACGGTTTGACATCAGGTCATAGGTTTCC-TTGACGCGTGGAATATCGTCACCGTGA 81714 | || | ||||||||||| ||| || || ||| || | || |||| || |||||| Sbjct 122781 AGTATTTGCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGA-TATCCTCGCCGTGA 122839 Query 81715 ATACCGATAGCTACACGCATAAACATGTACTG-GGGCGTCTCGC 81757 || || | ||||||||||| | ||||| ||| |||||| |||| Sbjct 122840 ATGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGT-TCGC 122882 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || ||||||||||| || |||||||||||| |||||| || | |||||| Sbjct 121148 GTTCGGAGATAGTACATCCCAGTCTTGAGGCCCAACTTCCAACCTGCAAAATGCATACTG 121207 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | ||| || | || |||| |||||||| || ||||| ||| ||| Sbjct 121208 GTGATCTTGCCCATTGTAGGATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATG 121267 Query 80158 AAAGCCCCACGATCTGCCGCCAT 80180 |||| |||||||| || ||||| Sbjct 121268 TAAGCACCACGATCGGCAGCCAT 121290 >seq112 Length=719005 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || ||||| |||||||||||| | Sbjct 202346 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTTGAGTCATCT 202287 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||| | || ||||| || |||||||| || || ||||||||| Sbjct 202286 GATACCATCGACAATGTAAAGTCGAAGATTCAAGATAAGGAGGGTATCCCACCAGACCAG 202227 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || |||||||| ||||||| || ||| || | ||||| || Sbjct 202226 CAGCGACTCATTTTCGCCGGCAAGCAACTTGAGGATGGGCGCACCTTATCTGACTACAAC 202167 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||| | ||| | ||||| || ||||| Sbjct 202166 ATCCAGAAGGAGTCCACACTCCATTTGGTCCTTCGTCTGCGTGGTGG 202120 Score = 161 bits (178), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || || ||||||||||| | |||||||||||| Sbjct 202118 ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACTATTACATTAGAGGTTGAGTCATCC 202059 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | || |||||||| |||||||| ||||| ||||||||| Sbjct 202058 GACACAATTGATAATGTTAAGTCAAAGATTCAGGATAAGGAGGGTATTCCACCAGACCAG 201999 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | || || ||||| ||||| | ||||||| ||||| | ||| ||||| || Sbjct 201998 CAGCGATTGATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGTACGTTGAGC-GACTACAA 201940 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||||||||| ||| || || | || ||||||||||| ||||| || Sbjct 201939 CATCCAAAAGGAGAGCACACTGCACTTGGTGTTGCGTCTTCGTGGTGGTCA 201889 Score = 145 bits (160), Expect = 9e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 || ||||| |||||||| ||||| ||||| | || || ||||| || | || | Sbjct 202562 GTTAAGACCCTTACCGGAAAGACCATTACGTTAGAAGTAGAGTCTTCGGACACTATCGAT 202503 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || ||||| || |||||||| ||||| ||||||||||| ||||| || Sbjct 202502 AACGTCAAGTCGAAGATTCAAGATAAGGAGGGTATTCCACCAGACCAGCAACGTCTTATC 202443 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||||||||| ||||| || | ||||||||| | ||||| || | || ||||| Sbjct 202442 TTTGCTGGTAAGCAGCTCGAAGACGGTCGTACCCTTTCCGACTACAACATTCAGAAGGAG 202383 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||||| | ||| | ||||| || ||||| Sbjct 202382 TCGACCCTTCACTTGGTCCTCCGTCTCCGTGGTGG 202348 Score = 136 bits (150), Expect = 5e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || ||||||||||| ||||| ||| | || | ||| | || | Sbjct 202831 ACTGGGAAGACCATCACTCTTGAGGTAGAGTCTTCTGACACTATCGACAATGTCAAATCC 202772 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||| |||||||| || |||||||| || ||||| ||| | ||||| || || ||| Sbjct 202771 AAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAGCAACGTTTGATTTTCGCCGGAAAG 202712 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | ||| ||||| | || || || |||||||||| |||||||||||| Sbjct 202711 CAGCTCGAGGACGGTCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTTCAT 202652 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | || || || ||||| Sbjct 202651 TTGGTTCTCCGCCTCCGTGGTGG 202629 >seq61 Length=91600 Score = 178 bits (196), Expect = 1e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||||||||| || || ||||| || || || || ||||||||||| Sbjct 25788 ATCATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCT 25847 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||| | || ||||| |||||||| || ||||| || ||| Sbjct 25848 TCGGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGCATTCCACCTGAC 25907 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| |||||||| || ||||| |||||||| || || | || ||||| | ||||| Sbjct 25908 CAGCAACGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTAC 25967 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || |||| ||||| || ||||||||||| ||| ||||||| || || ||| Sbjct 25968 AACATCCAGAAGGAGTCAACTCTTCATCTCGTCCTGCGTCTGCGTGGAGGA 26018 >seq190 Length=335796 Score = 134 bits (148), Expect = 2e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| ||||| |||||||| || || |||||||||||||| |||| || Sbjct 147804 CTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTTGAGGTTGAGTCCTCGGATACAAT 147745 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| | || ||||| |||||||||||||| || || |||||||| ||| | Sbjct 147744 CGACAATGTCAAGTCCAAGATTCAAGACAAGGAGGGAATCCCACCGGACCAGCAACGTTT 147685 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || || || |||||||||||||||| || || || | || || || |||| || Sbjct 147684 GATCTTCGCCGGCAAGCAACTCGAGGATGGACGCACTCTCTCCGATTACAACATCCAGAA 147625 Query 27594 GG 27595 || Sbjct 147624 GG 147623 >seq268 Length=317367 Score = 82.4 bits (90), Expect = 9e-11 Identities = 191/288 (66%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022 || || |||||| ||| || || |||||||| || ||||| || |||| ||| Sbjct 175073 CGTTCTATTCCATCCGTCATTGATGGATTCAAGCCTGGTCAACGCAAAGTCATATTTGCC 175014 Query 32023 TGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA 32082 ||| | || || ||| | | ||||||||||| | || || || || || | Sbjct 175013 TGCTTTAAACGAAATCTGGTGCGGGACATGAAGGTCGTCGAGTTGGGTGGTTATGTTTCC 174954 Query 32083 GAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCT 32142 ||| | || || || || || || || | || | || ||||| || |||||| Sbjct 174953 GAGAATACTGCTTACCATCATGGTGAATCTTCCATGCATCAGACCATAATCGGCCTTGCG 174894 Query 32143 CAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACC 32202 ||||| ||||| || |||| || |||| | || |||||| |||| | || || | Sbjct 174893 CAGAATTTTGTTGGATCAAACAATGTGAATTGTCTAGAGCCAAGTGGAAATTTCGGTAGT 174834 Query 32203 CGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACC 32250 | || || || || | ||||| ||||| ||||||| ||||||||| Sbjct 174833 AGACTTGCTGGAGGTACTGATGCAGCGAGTCCCCGTTATATCTTCACC 174786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570303805786000