Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq411 210 2e-49
seq112 188 8e-43
seq61 178 1e-39
seq190 134 2e-26
seq268 82.4 9e-11
>seq411
Length=256942
Score = 210 bits (232), Expect = 2e-49
Identities = 806/1244 (65%), Gaps = 39/1244 (3%)
Strand=Plus/Plus
Query 80538 ACCCCACATGTCGTGCTGCAAGATG-CCCTCCGACGCCGGAGACCCCGCGAACGTCTCGT 80596
||||||||| |||| || ||| | |||| ||| | ||||| ||| || | |||||||
Sbjct 121654 ACCCCACATATCGTATTG-AAGCTCACCCTTCGAGACTGGAGATCCCTCGTATGTCTCGT 121712
Query 80597 ACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACT 80656
| || || | |||| || || ||| || | | | || ||||| || || ||
Sbjct 121713 ATGGTCCAAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAGTCT 121772
Query 80657 CAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCA 80716
|||||| |||| | | |||| || ||||| | || | || ||
Sbjct 121773 CAAAGATCTGGATGTTGAGATGCTTGGCCTCAGGTGACTCGAATGGCAGACGCAGAGCCA 121832
Query 80717 TGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATC 80776
||| || ||||| || || ||||| || | || || || | ||| || ||| |||
Sbjct 121833 AGAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAGTTGGATT 121892
Query 80777 GCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA- 80835
|| || || |||| |||||| |||| ||||||| ||||||||| | ||
Sbjct 121893 TCTTTGCTTCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTT-CTTGACC 121951
Query 80836 ACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCT--TCA---CAA 80890
|||||| | || || || || ||||| ||||| || ||| || | ||| |||
Sbjct 121952 ACAACCTGGCAGACCTCGTGGAGCTTCTGGAAGTC--ATAGGTACCGTTGTTCATGTCAA 122009
Query 80891 ---ATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAA 80947
| | ||||| || ||| |||| || || || ||||| || | | |
Sbjct 122010 CGTAGGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGCGGAGT 122069
Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTT--AATTGTACCCAGGTTTTTCTGGTT 81005
||||||| || || ||||||| || || ||| ||| ||||| || || ||||||||
Sbjct 122070 ACTCGACAATCTCAGTGCACAGGTTGGAG--CTTCGAATGGTACCGAGATTCTTCTGGTT 122127
Query 81006 TGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGA 81065
||| ||||||||| ||||||||| |||| | ||| | || |||||| || |
Sbjct 122128 GCTCTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGC 122187
Query 81066 CTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGC 81125
| ||| |||| || ||||| | | ||||||| |||||| ||||| || ||
Sbjct 122188 TTCGAGAATGGAGTACCAAAGTTTCTGTGCCTTGATGGTCTTGCGACCCTTGCCCTCAGC 122247
Query 81126 CACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCA 81185
| ||||||| |||| | ||||| | |||| | | || | || |||||||
Sbjct 122248 CTCATACTTCTCGTATAGAGCCTCGAATTCATCACCATAGACATCTGCAAGACCTGGGCA 122307
Query 81186 CTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGC---CTTCATGAAAGC 81242
|||||| ||||||||||| ||| ||| | |||| | || | |||||||||
Sbjct 122308 CTCGTTGGGGCACATCAGTGTCCAT---GTGCCATTCTTTTCAACACGCTTCATGAACAG 122364
Query 81243 GTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGG 81300
|| ||||||||||| ||| ||| || || || |||||| | || || | || ||
Sbjct 122365 ATCTGGGATCCAGAGAGCGTAGAAGAGATCACG--AGCGCGAACTTCTTCCTTGCCGTGA 122422
Query 81301 TTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCG 81360
|| || | || || | || | | || || ||||||||||| || || | ||||
Sbjct 122423 TTTTTTCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCG 122482
Query 81361 ATCGACCCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACA 81417
| | || || | |||||||||| || || | |||||| ||| || ||
Sbjct 122483 AATGCACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAACACT 122542
Query 81418 CGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTG 81477
| | |||||| | |||||| | || | ||||| || || | || | || ||
Sbjct 122543 CTGAGCATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTG 122602
Query 81478 GCGCGCACCTTGCTGA--TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCAC 81535
|| || | || || |||| ||||||| ||||| | ||| || ||| ||||
Sbjct 122603 GCTCGAATTCTGTGGACATTGA--GACCGATACCACCAGCATTCTTAGAGATCATGGCAC 122660
Query 81536 ACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAAC 81595
| || | || || || || || || || ||||| | |||||||||| ||||| |
Sbjct 122661 AAGTCTTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAATTAAGAAGC 122720
Query 81596 AGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGA 81655
| || | || | | || ||||||| ||| |||||||| | ||||| |||
Sbjct 122721 ACGAAGAAAGTTGTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTGA 122780
Query 81656 AATAACGGTTTGACATCAGGTCATAGGTTTCC-TTGACGCGTGGAATATCGTCACCGTGA 81714
| || | ||||||||||| ||| || || ||| || | || |||| || ||||||
Sbjct 122781 AGTATTTGCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGA-TATCCTCGCCGTGA 122839
Query 81715 ATACCGATAGCTACACGCATAAACATGTACTG-GGGCGTCTCGC 81757
|| || | ||||||||||| | ||||| ||| |||||| ||||
Sbjct 122840 ATGCCAACTGCTACACGCATGATCATGTGCTGCGGGCGT-TCGC 122882
Score = 82.4 bits (90), Expect = 9e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097
|| || ||||||||||| || |||||||||||| |||||| || | ||||||
Sbjct 121148 GTTCGGAGATAGTACATCCCAGTCTTGAGGCCCAACTTCCAACCTGCAAAATGCATACTG 121207
Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157
||| ||| | | ||| || | || |||| |||||||| || ||||| ||| |||
Sbjct 121208 GTGATCTTGCCCATTGTAGGATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATG 121267
Query 80158 AAAGCCCCACGATCTGCCGCCAT 80180
|||| |||||||| || |||||
Sbjct 121268 TAAGCACCACGATCGGCAGCCAT 121290
>seq112
Length=719005
Score = 188 bits (208), Expect = 8e-43
Identities = 178/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || |||||||| || ||||| |||||||||||| |
Sbjct 202346 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTTGAGTCATCT 202287
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| | ||| | || ||||| || |||||||| || || |||||||||
Sbjct 202286 GATACCATCGACAATGTAAAGTCGAAGATTCAAGATAAGGAGGGTATCCCACCAGACCAG 202227
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || ||||| || || |||||||| ||||||| || ||| || | ||||| ||
Sbjct 202226 CAGCGACTCATTTTCGCCGGCAAGCAACTTGAGGATGGGCGCACCTTATCTGACTACAAC 202167
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || ||| | ||| | ||||| || |||||
Sbjct 202166 ATCCAGAAGGAGTCCACACTCCATTTGGTCCTTCGTCTGCGTGGTGG 202120
Score = 161 bits (178), Expect = 1e-34
Identities = 176/231 (76%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| | || || ||||||||||| | ||||||||||||
Sbjct 202118 ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACTATTACATTAGAGGTTGAGTCATCC 202059
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| | ||| | || |||||||| |||||||| ||||| |||||||||
Sbjct 202058 GACACAATTGATAATGTTAAGTCAAAGATTCAGGATAAGGAGGGTATTCCACCAGACCAG 201999
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| | || || ||||| ||||| | ||||||| ||||| | ||| ||||| ||
Sbjct 201998 CAGCGATTGATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGTACGTTGAGC-GACTACAA 201940
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||||||||| ||| || || | || ||||||||||| ||||| ||
Sbjct 201939 CATCCAAAAGGAGAGCACACTGCACTTGGTGTTGCGTCTTCGTGGTGGTCA 201889
Score = 145 bits (160), Expect = 9e-30
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|| ||||| |||||||| ||||| ||||| | || || ||||| || | || |
Sbjct 202562 GTTAAGACCCTTACCGGAAAGACCATTACGTTAGAAGTAGAGTCTTCGGACACTATCGAT 202503
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| | ||| | || ||||| || |||||||| ||||| ||||||||||| ||||| ||
Sbjct 202502 AACGTCAAGTCGAAGATTCAAGATAAGGAGGGTATTCCACCAGACCAGCAACGTCTTATC 202443
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|||||||||||||| ||||| || | ||||||||| | ||||| || | || |||||
Sbjct 202442 TTTGCTGGTAAGCAGCTCGAAGACGGTCGTACCCTTTCCGACTACAACATTCAGAAGGAG 202383
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || ||||| | ||| | ||||| || |||||
Sbjct 202382 TCGACCCTTCACTTGGTCCTCCGTCTCCGTGGTGG 202348
Score = 136 bits (150), Expect = 5e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| || ||||| || ||||||||||| ||||| ||| | || | ||| | || |
Sbjct 202831 ACTGGGAAGACCATCACTCTTGAGGTAGAGTCTTCTGACACTATCGACAATGTCAAATCC 202772
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| ||||| |||||||| || |||||||| || ||||| ||| | ||||| || || |||
Sbjct 202771 AAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAGCAACGTTTGATTTTCGCCGGAAAG 202712
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| |||||||| | ||| ||||| | || || || |||||||||| ||||||||||||
Sbjct 202711 CAGCTCGAGGACGGTCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTTCAT 202652
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
| || | || || || |||||
Sbjct 202651 TTGGTTCTCCGCCTCCGTGGTGG 202629
>seq61
Length=91600
Score = 178 bits (196), Expect = 1e-39
Identities = 178/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| |||||||||||||| || || ||||| || || || || |||||||||||
Sbjct 25788 ATCATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCT 25847
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||| | ||| | ||| | || ||||| |||||||| || ||||| || |||
Sbjct 25848 TCGGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGCATTCCACCTGAC 25907
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
||||| |||||||| || ||||| |||||||| || || | || ||||| | |||||
Sbjct 25908 CAGCAACGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTAC 25967
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
|| |||| ||||| || ||||||||||| ||| ||||||| || || |||
Sbjct 25968 AACATCCAGAAGGAGTCAACTCTTCATCTCGTCCTGCGTCTGCGTGGAGGA 26018
>seq190
Length=335796
Score = 134 bits (148), Expect = 2e-26
Identities = 139/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| |||||||| ||||| |||||||| || || |||||||||||||| |||| ||
Sbjct 147804 CTTCGTCAAGACCCTTACGGGCAAGACCATCACGCTTGAGGTTGAGTCCTCGGATACAAT 147745
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
| ||| | ||| | || ||||| |||||||||||||| || || |||||||| ||| |
Sbjct 147744 CGACAATGTCAAGTCCAAGATTCAAGACAAGGAGGGAATCCCACCGGACCAGCAACGTTT 147685
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || || || |||||||||||||||| || || || | || || || |||| ||
Sbjct 147684 GATCTTCGCCGGCAAGCAACTCGAGGATGGACGCACTCTCTCCGATTACAACATCCAGAA 147625
Query 27594 GG 27595
||
Sbjct 147624 GG 147623
>seq268
Length=317367
Score = 82.4 bits (90), Expect = 9e-11
Identities = 191/288 (66%), Gaps = 0/288 (0%)
Strand=Plus/Minus
Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022
|| || |||||| ||| || || |||||||| || ||||| || |||| |||
Sbjct 175073 CGTTCTATTCCATCCGTCATTGATGGATTCAAGCCTGGTCAACGCAAAGTCATATTTGCC 175014
Query 32023 TGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA 32082
||| | || || ||| | | ||||||||||| | || || || || || |
Sbjct 175013 TGCTTTAAACGAAATCTGGTGCGGGACATGAAGGTCGTCGAGTTGGGTGGTTATGTTTCC 174954
Query 32083 GAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCT 32142
||| | || || || || || || || | || | || ||||| || ||||||
Sbjct 174953 GAGAATACTGCTTACCATCATGGTGAATCTTCCATGCATCAGACCATAATCGGCCTTGCG 174894
Query 32143 CAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACC 32202
||||| ||||| || |||| || |||| | || |||||| |||| | || || |
Sbjct 174893 CAGAATTTTGTTGGATCAAACAATGTGAATTGTCTAGAGCCAAGTGGAAATTTCGGTAGT 174834
Query 32203 CGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACC 32250
| || || || || | ||||| ||||| ||||||| |||||||||
Sbjct 174833 AGACTTGCTGGAGGTACTGATGCAGCGAGTCCCCGTTATATCTTCACC 174786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570303805786000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |