Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq112 98.7 6e-16
seq61 91.5 9e-14
>seq112
Length=719005
Score = 98.7 bits (108), Expect = 6e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||||||||||||||| || || |||||||||||||| ||||| || ||
Sbjct 201892 CCACCACGAAGACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTC 201951
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | || || | || || || || || || || ||||| ||||| || ||
Sbjct 201952 AACGTACGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGA 202011
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658
| |||||||| || ||| |||| ||||| || ||||||||| ||| ||
Sbjct 202012 ATACCCTCCTTATC-CTGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAAC 202070
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | || || || || || || || || |||||||| ||||||||
Sbjct 202071 CTCTAATGTAATAGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118
Score = 84.2 bits (92), Expect = 1e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||||||||| ||| |||||| || ||||| || || || | || |||
Sbjct 202129 AGACGAAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGC 202188
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || |||||||| || ||||| || || | ||||| ||||| || || | ||||||
Sbjct 202189 CCATCCTCAAGTTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATACCCTCC 202248
Query 34609 TTGTCTGTGATCTT 34622
|| ||| |||||
Sbjct 202249 TTATCTTGAATCTT 202262
>seq61
Length=91600
Score = 91.5 bits (100), Expect = 9e-14
Identities = 158/227 (70%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| || | ||| ||||| |||||| || ||||| || || || || || ||
Sbjct 26008 AGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 25949
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||||||||| || || || || |||| ||| || ||||| || || | || |||
Sbjct 25948 CCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGGAATGCCTTCC 25889
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| ||| || | || || | || ||||| ||| || || | |||
Sbjct 25888 TTGTCT-TGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGT 25830
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTG 34714
|| ||||| || || | || || ||||| ||||||||| ||| ||
Sbjct 25829 GATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATGATGACTG 25783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314726051915525
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |