Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq112 98.7 6e-16 seq61 91.5 9e-14 >seq112 Length=719005 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||||||||| || || |||||||||||||| ||||| || || Sbjct 201892 CCACCACGAAGACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTC 201951 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || | || || || || || || || ||||| ||||| || || Sbjct 201952 AACGTACGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGA 202011 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| || ||| |||| ||||| || ||||||||| ||| || Sbjct 202012 ATACCCTCCTTATC-CTGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAAC 202070 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || || || || || || |||||||| |||||||| Sbjct 202071 CTCTAATGTAATAGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||||| ||| |||||| || ||||| || || || | || ||| Sbjct 202129 AGACGAAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGC 202188 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || |||||||| || ||||| || || | ||||| ||||| || || | |||||| Sbjct 202189 CCATCCTCAAGTTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATACCCTCC 202248 Query 34609 TTGTCTGTGATCTT 34622 || ||| ||||| Sbjct 202249 TTATCTTGAATCTT 202262 >seq61 Length=91600 Score = 91.5 bits (100), Expect = 9e-14 Identities = 158/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| || | ||| ||||| |||||| || ||||| || || || || || || Sbjct 26008 AGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 25949 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||||||||| || || || || |||| ||| || ||||| || || | || ||| Sbjct 25948 CCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGGAATGCCTTCC 25889 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || | || || | || ||||| ||| || || | ||| Sbjct 25888 TTGTCT-TGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGT 25830 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTG 34714 || ||||| || || | || || ||||| ||||||||| ||| || Sbjct 25829 GATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATGATGACTG 25783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314726051915525