Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq61 127 2e-24 seq112 123 2e-23 seq190 84.2 2e-11 >seq61 Length=91600 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || ||||| | || || || || || || | || Sbjct 25790 CATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTC 25849 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || ||||||||||| |||||||| ||||| || || Sbjct 25850 GGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGCATTCCACCTGACCA 25909 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| |||| | ||| ||||| ||| | |||||| | ||| | ||||| ||||| Sbjct 25910 GCAACGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTACAA 25969 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||| || | ||| | || ||||| |||| || || Sbjct 25970 CATCCAGAAGGAGTCAACTCTTCATCTCGTCCTGCGTCTGCGTGGAGG 26017 >seq112 Length=719005 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || || ||| | || |||||||| || || | || ||| | || || | |||||| Sbjct 202831 ACTGGGAAGACCATCACTCTTGAGGTAGAGTCTTCTGACACTATCGACAATGTCAAATCC 202772 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||||||||||| |||||||| || || ||||| || ||||| || | |||||| || Sbjct 202771 AAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAGCAACGTTTGATTTTCGCCGGAAAG 202712 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || ||| || ||| | || ||||||||||| ||||||||||| || | ||| Sbjct 202711 CAGCTCGAGGACGGTCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTTCAT 202652 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| | || | || ||||| || Sbjct 202651 TTGGTTCTCCGCCTCCGTGGTGGTAT 202626 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || || || ||||| ||| | ||||| | ||||| || | || ||| | || || Sbjct 202562 GTTAAGACCCTTACCGGAAAGACCATTACGTTAGAAGTAGAGTCTTCGGACACTATCGAT 202503 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | ||||| || |||||||| || || || || ||||| || || || ||| | || Sbjct 202502 AACGTCAAGTCGAAGATTCAAGATAAGGAGGGTATTCCACCAGACCAGCAACGTCTTATC 202443 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | || || || || | |||||| || ||| ||||||| ||||||||||| |||||| Sbjct 202442 TTTGCTGGTAAGCAGCTCGAAGACGGTCGTACCCTTTCCGACTACAACATTCAGAAGGAG 202383 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| | || ||||| | ||| | || ||||| || Sbjct 202382 TCGACCCTTCACTTGGTCCTCCGTCTCCGTGGTGGTAT 202345 >seq190 Length=335796 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || || || || |||||| | || || ||||| || || | || || | || Sbjct 147803 TTCGTCAAGACCCTTACGGGCAAGACCATCACGCTTGAGGTTGAGTCCTCGGATACAATC 147744 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| || ||||||||||| || || || ||||| || || || ||||| Sbjct 147743 GACAATGTCAAGTCCAAGATTCAAGACAAGGAGGGAATCCCACCGGACCAGCAACGTTTG 147684 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | ||||||||| ||| | || || | || | |||||||||||||| || ||| Sbjct 147683 ATCTTCGCCGGCAAGCAACTCGAGGATGGACGCACTCTCTCCGATTACAACATCCAGAAG 147624 Query 27177 G 27177 | Sbjct 147623 G 147623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434913371256000