Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq112 98.7 7e-16 >seq112 Length=719005 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| ||| |||||||| || ||||| |||||||| || | || Sbjct 202762 GACAAGGAAGGCATTCCTCCGGATCAGCAACGTTTGATTTTCGCCGGAAAGCAGCTCGAG 202703 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| |||| | | || ||||||||||||||||| ||| |||| | ||||||||| | Sbjct 202702 GACGGTCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTTCATTTGGTTCTC 202643 Query 28003 CGTTTGCGTGGCGG 28016 || | ||||| || Sbjct 202642 CGCCTCCGTGGTGG 202629 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| ||| | ||||| || ||||||| | || || || || Sbjct 202118 ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACTATTACATTAGAGGTTGAGTCATCC 202059 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || ||| || || || || ||| |||| || | Sbjct 202058 GACACAATTGATAAT--GTTAAGTCAAAGATTCAGGATAAGGAGGGTATTCCACCAGACC 202001 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || || || || || || || ||||| || | || | ||| ||| |||| Sbjct 202000 AGCAGCGATTGATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGTACGTTGAGCGACTACA 201941 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| |||||||| |||| ||||| |||||| | ||||| || Sbjct 201940 ACATCCAAAAGGAGAGCACACTGCACTTGGTGTTGCGTCTTCGTGGTGG 201892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355858388207475