Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq112 98.7 7e-16
>seq112
Length=719005
Score = 98.7 bits (108), Expect = 7e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| ||||| |||| ||| |||||||| || ||||| |||||||| || | ||
Sbjct 202762 GACAAGGAAGGCATTCCTCCGGATCAGCAACGTTTGATTTTCGCCGGAAAGCAGCTCGAG 202703
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| |||| | | || ||||||||||||||||| ||| |||| | ||||||||| |
Sbjct 202702 GACGGTCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTTCATTTGGTTCTC 202643
Query 28003 CGTTTGCGTGGCGG 28016
|| | ||||| ||
Sbjct 202642 CGCCTCCGTGGTGG 202629
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || |||||||| ||| | ||||| || ||||||| | || || || ||
Sbjct 202118 ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACTATTACATTAGAGGTTGAGTCATCC 202059
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || | ||| || || ||| || || || || ||| |||| || |
Sbjct 202058 GACACAATTGATAAT--GTTAAGTCAAAGATTCAGGATAAGGAGGGTATTCCACCAGACC 202001
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| || || || || || || || || ||||| || | || | ||| ||| ||||
Sbjct 202000 AGCAGCGATTGATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGTACGTTGAGCGACTACA 201941
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||||| |||||||| |||| ||||| |||||| | ||||| ||
Sbjct 201940 ACATCCAAAAGGAGAGCACACTGCACTTGGTGTTGCGTCTTCGTGGTGG 201892
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355858388207475
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |