Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq61 181 2e-40 seq112 147 5e-30 seq411 104 5e-17 seq511 102 2e-16 >seq61 Length=91600 Score = 181 bits (200), Expect = 2e-40 Identities = 175/225 (78%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| || |||||||| ||||| || |||||||| || || | || Sbjct 26015 TCCACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAG 25956 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || ||||| || |||||||| |||||||| || ||||| |||||||| |||| Sbjct 25955 GGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGGAAT 25896 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||||||||| || ||||| || || || ||||||||||| || |||||||| Sbjct 25895 GCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTC 25836 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || || |||||||| ||||| ||||| | |||||| Sbjct 25835 GAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 25791 >seq112 Length=719005 Score = 147 bits (162), Expect = 5e-30 Identities = 141/181 (78%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||||||||| ||||||||||| ||||| | ||||| | || || || |||||| Sbjct 202653 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCCTCGAGCTGC 202712 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || ||||| || | ||||| || || ||||||| ||||||||||| || ||||| Sbjct 202713 TTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGAATCTTG 202772 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || || ||||| |||||||| || ||||| |||||||| ||||| || ||| Sbjct 202773 GATTTGACATTGTCGATAGTGTCAGAAGACTCTACCTCAAGAGTGATGGTCTTCCCAGTG 202832 Query 211092 A 211092 | Sbjct 202833 A 202833 Score = 125 bits (138), Expect = 2e-23 Identities = 163/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | | || | ||| || ||| ||| ||||||||||| || || | ||| | Sbjct 201897 ACGAAGACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAA-CG 201955 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | ||||| |||| ||||||||| |||||||| | || || ||||| || |||| | Sbjct 201956 TACGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATAC 202015 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 | ||||| ||||| |||||| || || || || || ||||| || |||||||| | Sbjct 202016 CCTCCTTATCCTGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAACCTCTA 202075 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || |||||||| || | |||||| ||||| | |||||| Sbjct 202076 ATGTAATAGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118 >seq411 Length=256942 Score = 104 bits (114), Expect = 5e-17 Identities = 192/277 (69%), Gaps = 10/277 (4%) Strand=Plus/Plus Query 178094 TTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCC 178150 ||||| ||||||||||||| ||||| ||||| ||||| |||||||| |||| Sbjct 122117 TTCTTCTGGTTGCTCTTTCGGTTGCAA---GCATCCTTGTAGAGCATGAAGGGGTTTCCA 122173 Query 178151 ACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTG 178210 ||| | ||| || |||||||| | |||||| | ||| || || ||||| Sbjct 122174 GTCTCGGTTTGGGCTTCGAGAATGGAGTACCAAAGTTTCTGTGCCTTGATGGTCTTGCGA 122233 Query 178211 GCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCA 178270 | || || ||| ||| ||||| | ||| || |||||||||| ||||||||||| Sbjct 122234 CCCTTGCCCTCAGCCTCATACTTCTCGTATAGAGCCTCGAATTCATCACCATAGACATCT 122293 Query 178271 TCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCA-CTGACCGTCTTCCTTC-ACTC 178328 | ||||| || ||| |||||||| | || |||| || | |||| ||| || | Sbjct 122294 GCAAGACCTGGGCACTCGTTGGGGCACATCAGTGTCCATGTGCCATTCTT--TTCAACAC 122351 Query 178329 GTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 | |||||||| || || | | |||||| || ||||| Sbjct 122352 GCTTCATGAACAGATCTGGGATCCAGAGAGCGTAGAA 122388 >seq511 Length=229750 Score = 102 bits (112), Expect = 2e-16 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 || |||||||||||||| | || |||||||||||||| ||||||| | || || || Sbjct 99656 CTACCAAAGAAGCACGGTCGTGGTGGACAATCTGCTCTTCGTTTTGCCCGTCTCCGTGAG 99597 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAA 139926 || ||| | || || || | |||||||||| ||| || |||| || |||| | Sbjct 99596 GAGAAGCGTCATAATTATGTTCGAAAAGTTGCCGAGTTGGCCGTACAAAACTTCATCACA 99537 Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAG 139986 | ||||| |||| ||||||| ||||||| ||||| ||||| ||||||| | Sbjct 99536 GCAGACAAGGTCAATGTTGCTGGTATCATTTTGGCTGGTTCTGCAGATTTCAAGAACGAT 99477 Query 139987 CTCCTGGAATCTGACTTTTTTGACCCGAGGCTCAAGTCGAAAGT 140030 | |||||||||| || ||| | ||| || ||||||| Sbjct 99476 TTGAATCAATCTGACTTGTTCGACAATCGTCTCCAGACGAAAGT 99433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159138262237625