Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq61 181 2e-40
seq112 147 5e-30
seq411 104 5e-17
seq511 102 2e-16
>seq61
Length=91600
Score = 181 bits (200), Expect = 2e-40
Identities = 175/225 (78%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | ||||| || |||||||| ||||| || |||||||| || || | ||
Sbjct 26015 TCCACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAG 25956
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | || ||||| || |||||||| |||||||| || ||||| |||||||| ||||
Sbjct 25955 GGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGGAAT 25896
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
||||||||||| || ||||| || || || ||||||||||| || ||||||||
Sbjct 25895 GCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTC 25836
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| ||||| || || |||||||| ||||| ||||| | ||||||
Sbjct 25835 GAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 25791
>seq112
Length=719005
Score = 147 bits (162), Expect = 5e-30
Identities = 141/181 (78%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
|||||||||||||| ||||||||||| ||||| | ||||| | || || || ||||||
Sbjct 202653 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCCTCGAGCTGC 202712
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || ||||| || | ||||| || || ||||||| ||||||||||| || |||||
Sbjct 202713 TTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGAATCTTG 202772
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
||| || || ||||| |||||||| || ||||| |||||||| ||||| || |||
Sbjct 202773 GATTTGACATTGTCGATAGTGTCAGAAGACTCTACCTCAAGAGTGATGGTCTTCCCAGTG 202832
Query 211092 A 211092
|
Sbjct 202833 A 202833
Score = 125 bits (138), Expect = 2e-23
Identities = 163/223 (73%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951
|||||| | | || | ||| || ||| ||| ||||||||||| || || | ||| |
Sbjct 201897 ACGAAGACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAA-CG 201955
Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011
| | ||||| |||| ||||||||| |||||||| | || || ||||| || |||| |
Sbjct 201956 TACGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATAC 202015
Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071
| ||||| ||||| |||||| || || || || || ||||| || |||||||| |
Sbjct 202016 CCTCCTTATCCTGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAACCTCTA 202075
Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || |||||||| || | |||||| ||||| | ||||||
Sbjct 202076 ATGTAATAGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118
>seq411
Length=256942
Score = 104 bits (114), Expect = 5e-17
Identities = 192/277 (69%), Gaps = 10/277 (4%)
Strand=Plus/Plus
Query 178094 TTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCC 178150
||||| ||||||||||||| ||||| ||||| ||||| |||||||| ||||
Sbjct 122117 TTCTTCTGGTTGCTCTTTCGGTTGCAA---GCATCCTTGTAGAGCATGAAGGGGTTTCCA 122173
Query 178151 ACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTG 178210
||| | ||| || |||||||| | |||||| | ||| || || |||||
Sbjct 122174 GTCTCGGTTTGGGCTTCGAGAATGGAGTACCAAAGTTTCTGTGCCTTGATGGTCTTGCGA 122233
Query 178211 GCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCA 178270
| || || ||| ||| ||||| | ||| || |||||||||| |||||||||||
Sbjct 122234 CCCTTGCCCTCAGCCTCATACTTCTCGTATAGAGCCTCGAATTCATCACCATAGACATCT 122293
Query 178271 TCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCA-CTGACCGTCTTCCTTC-ACTC 178328
| ||||| || ||| |||||||| | || |||| || | |||| ||| || |
Sbjct 122294 GCAAGACCTGGGCACTCGTTGGGGCACATCAGTGTCCATGTGCCATTCTT--TTCAACAC 122351
Query 178329 GTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365
| |||||||| || || | | |||||| || |||||
Sbjct 122352 GCTTCATGAACAGATCTGGGATCCAGAGAGCGTAGAA 122388
>seq511
Length=229750
Score = 102 bits (112), Expect = 2e-16
Identities = 157/224 (70%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866
|| |||||||||||||| | || |||||||||||||| ||||||| | || || ||
Sbjct 99656 CTACCAAAGAAGCACGGTCGTGGTGGACAATCTGCTCTTCGTTTTGCCCGTCTCCGTGAG 99597
Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAA 139926
|| ||| | || || || | |||||||||| ||| || |||| || |||| |
Sbjct 99596 GAGAAGCGTCATAATTATGTTCGAAAAGTTGCCGAGTTGGCCGTACAAAACTTCATCACA 99537
Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAG 139986
| ||||| |||| ||||||| ||||||| ||||| ||||| ||||||| |
Sbjct 99536 GCAGACAAGGTCAATGTTGCTGGTATCATTTTGGCTGGTTCTGCAGATTTCAAGAACGAT 99477
Query 139987 CTCCTGGAATCTGACTTTTTTGACCCGAGGCTCAAGTCGAAAGT 140030
| |||||||||| || ||| | ||| || |||||||
Sbjct 99476 TTGAATCAATCTGACTTGTTCGACAATCGTCTCCAGACGAAAGT 99433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159138262237625
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |