Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq61 118 7e-22
seq112 95.1 8e-15
seq190 93.3 3e-14
>seq61
Length=91600
Score = 118 bits (130), Expect = 7e-22
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||||||||||| ||||| ||||| ||||| ||||| || ||
Sbjct 25791 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCG 25850
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || ||| ||||| ||||| | || || || ||
Sbjct 25851 GACACCATCGACAATGTCAAGTC-CAAGATTCAAGACAAGGAAGGCATTCCACCTGACCA 25909
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| ||| |||| || || ||||| ||||| ||||||| ||||| | ||| |||||
Sbjct 25910 GCAACGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTACAA 25969
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
||| || || ||||| || | ||| | || | | |||| ||||||
Sbjct 25970 CATCCAGAAGGAGTCAACTCTTCATCTCGTCCTGCGTCTGCGTGGAGGA 26018
>seq112
Length=719005
Score = 95.1 bits (104), Expect = 8e-15
Identities = 136/189 (72%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 23633 TCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAA 23691
|||| || || || |||||||| || || || || | |||||| | || ||| | |||
Sbjct 202833 TCACTGGGAAGACCATCACTCTTGAGGTAGAGTCTTCTGACACTATCGACAATGTCAAAT 202774
Query 23692 CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGC 23751
| || | || ||||| ||||| | || || ||||| || ||||| || || |||||
Sbjct 202773 CCAAGA-TTCAAGACAAGGAAGGCATTCCTCCGGATCAGCAACGTTTGATTTTCGCCGGA 202715
Query 23752 AAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTA 23811
|| || || || |||| ||||| | ||||||||||| ||||| |||||||| |
Sbjct 202714 AAGCAGCTCGAGGACGGTCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTT 202655
Query 23812 CATTTAGTT 23820
||||| |||
Sbjct 202654 CATTTGGTT 202646
>seq190
Length=335796
Score = 93.3 bits (102), Expect = 3e-14
Identities = 130/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679
||||| || ||||| ||||| || || ||||| || || ||||| ||| |||| || |
Sbjct 147803 TTCGTCAAGACCCTTACGGGCAAGACCATCACGCTTGAGGTTGAGTCCTCGGATACAATC 147744
Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738
|| ||| | || | || | || ||||| || || | || || || || || |||||
Sbjct 147743 GACAATGTCAAGTCCAAGA-TTCAAGACAAGGAGGGAATCCCACCGGACCAGCAACGTTT 147685
Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798
|| || |||||||| ||||| || || | ||||||| | |||||||||||| || ||
Sbjct 147684 GATCTTCGCCGGCAAGCAACTCGAGGATGGACGCACTCTCTCCGATTACAACATCCAGAA 147625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338005789469900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |