Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq61 136 9e-27
seq112 125 2e-23
seq123 118 3e-21
seq190 111 4e-19
>seq61
Length=91600
Score = 136 bits (150), Expect = 9e-27
Identities = 149/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | |||||| || || ||||| || || || |||| ||||| |||| | ||
Sbjct 26012 ACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 25953
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || ||||| || ||||| ||||||||||| || ||||| ||||| || ||||| ||
Sbjct 25952 GCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGGAATGCC 25893
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||||||| ||||| ||| ||| ||||||||||| || | || || || |
Sbjct 25892 TTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAG 25833
Query 225672 CGTGATCGTCTTGCCCGT 225689
||||| || ||||||||
Sbjct 25832 GGTGATGGTTTTGCCCGT 25815
>seq112
Length=719005
Score = 125 bits (138), Expect = 2e-23
Identities = 152/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| || ||| || ||||||| ||||| ||| ||| ||
Sbjct 201897 ACGAAGACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAACGT 201956
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || | |||||| ||||||||||| | ||| || ||||| || ||||||||
Sbjct 201957 ACGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATACC 202016
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| || || |||||| ||| ||| || || ||||| || | || || |||||
Sbjct 202017 CTCCTTATCCTGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAACCTCTAA 202076
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
|| || ||||| || |||||||| ||
Sbjct 202077 TGTAATAGTCTTTCCAGTCAAAGTCTT 202103
Score = 102 bits (112), Expect = 2e-16
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|| |||||||| || ||||||| |||||||| | | || | || || || ||||||
Sbjct 202653 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCCTCGAGCTGC 202712
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| || ||||| || | ||||| || || || ||||| |||||||||||||| |||||
Sbjct 202713 TTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGAATCTTG 202772
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|| ||| ||||| ||||| || | || || || | ||||| ||||| || ||
Sbjct 202773 GATTTGACATTGTCGATAGTGTCAGAAGACTCTACCTCAAGAGTGATGGTCTTCCCAGT 202831
>seq123
Length=40638
Score = 118 bits (130), Expect = 3e-21
Identities = 201/288 (70%), Gaps = 5/288 (2%)
Strand=Plus/Plus
Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500
|| |||||| ||||||||| | ||||| || | | ||||| |||||| || ||
Sbjct 36104 ACATTATATCTAATATTTGCTTTATTTTCCGGACTATTGGGTACAGCTTTTTCTGTGCTT 36163
Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACTTTA 7559
||| || ||||| || || || ||| |||| |||||| | |||| ||| | ||
Sbjct 36164 ATACGGCTAGAACTAAGTGGACCTGGTGTTCAATATATTGCA-GATAAT---CAATTGTA 36219
Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619
||| | || || || || || || | | ||||| |||||| | |||||||| | | |
Sbjct 36220 CAATGCCATCATAACTGCTCACGCAATATTAATGATATTCTTTATGGTTATGCCTGCTTT 36279
Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679
|| || || || || |||| || | || ||| | | || | |||||||||||| ||
Sbjct 36280 AATTGGTGGGTTTGGTAATTTTTTATTACCATTATTAGTAGGAGGTCCTGATATGGCATT 36339
Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727
|| || ||||| || |||||||| |||||| |||| ||| |||||
Sbjct 36340 CCCTAGACTTAATAACATAAGTTTCTGATTATTACCACCTAGTTTATT 36387
Score = 84.2 bits (92), Expect = 5e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||| || ||||| ||||||||||| | ||||||||| || |||||||| ||||| ||||
Sbjct 36784 TTCTGGGTGACCGAAAAATCAGAAAAGATGTTGATACAGTATAGGATCTCCTCCTCCTGC 36725
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGT 370767
|| ||||| || ||||||||||| | ||| ||
Sbjct 36724 TGCTTCAAAGAATGATGTATTAAAATTACGATCTGT 36689
>seq190
Length=335796
Score = 111 bits (122), Expect = 4e-19
Identities = 123/164 (75%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| |||||||||| | ||| | ||||| || || ||||| || ||||||||
Sbjct 147625 TTCTGGATGTTGTAATCGGAGAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAAGATC 147684
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| ||||| ||||| || || || || ||||||||||| ||||| ||| ||| |||
Sbjct 147685 AAACGTTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTGGACTTGACATTGTCG 147744
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|| || || |||| || || || | |||||| |||||||||||
Sbjct 147745 ATTGTATCCGAGGACTCAACCTCAAGCGTGATGGTCTTGCCCGT 147788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192517066641950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |