Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq61 136 9e-27 seq112 125 2e-23 seq123 118 3e-21 seq190 111 4e-19 >seq61 Length=91600 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| || || ||||| || || || |||| ||||| |||| | || Sbjct 26012 ACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 25953 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || ||||| ||||||||||| || ||||| ||||| || ||||| || Sbjct 25952 GCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGGAATGCC 25893 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||| ||| ||| ||||||||||| || | || || || | Sbjct 25892 TTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAG 25833 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| || |||||||| Sbjct 25832 GGTGATGGTTTTGCCCGT 25815 >seq112 Length=719005 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || ||| || ||||||| ||||| ||| ||| || Sbjct 201897 ACGAAGACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAACGT 201956 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || | |||||| ||||||||||| | ||| || ||||| || |||||||| Sbjct 201957 ACGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATACC 202016 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || || |||||| ||| ||| || || ||||| || | || || ||||| Sbjct 202017 CTCCTTATCCTGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAACCTCTAA 202076 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || ||||| || |||||||| || Sbjct 202077 TGTAATAGTCTTTCCAGTCAAAGTCTT 202103 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || |||||||| || ||||||| |||||||| | | || | || || || |||||| Sbjct 202653 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCCTCGAGCTGC 202712 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || ||||| || | ||||| || || || ||||| |||||||||||||| ||||| Sbjct 202713 TTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGAATCTTG 202772 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| ||||| ||||| || | || || || | ||||| ||||| || || Sbjct 202773 GATTTGACATTGTCGATAGTGTCAGAAGACTCTACCTCAAGAGTGATGGTCTTCCCAGT 202831 >seq123 Length=40638 Score = 118 bits (130), Expect = 3e-21 Identities = 201/288 (70%), Gaps = 5/288 (2%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || |||||| ||||||||| | ||||| || | | ||||| |||||| || || Sbjct 36104 ACATTATATCTAATATTTGCTTTATTTTCCGGACTATTGGGTACAGCTTTTTCTGTGCTT 36163 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACTTTA 7559 ||| || ||||| || || || ||| |||| |||||| | |||| ||| | || Sbjct 36164 ATACGGCTAGAACTAAGTGGACCTGGTGTTCAATATATTGCA-GATAAT---CAATTGTA 36219 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 ||| | || || || || || || | | ||||| |||||| | |||||||| | | | Sbjct 36220 CAATGCCATCATAACTGCTCACGCAATATTAATGATATTCTTTATGGTTATGCCTGCTTT 36279 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || || || || |||| || | || ||| | | || | |||||||||||| || Sbjct 36280 AATTGGTGGGTTTGGTAATTTTTTATTACCATTATTAGTAGGAGGTCCTGATATGGCATT 36339 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 || || ||||| || |||||||| |||||| |||| ||| ||||| Sbjct 36340 CCCTAGACTTAATAACATAAGTTTCTGATTATTACCACCTAGTTTATT 36387 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || ||||| ||||||||||| | ||||||||| || |||||||| ||||| |||| Sbjct 36784 TTCTGGGTGACCGAAAAATCAGAAAAGATGTTGATACAGTATAGGATCTCCTCCTCCTGC 36725 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGT 370767 || ||||| || ||||||||||| | ||| || Sbjct 36724 TGCTTCAAAGAATGATGTATTAAAATTACGATCTGT 36689 >seq190 Length=335796 Score = 111 bits (122), Expect = 4e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| |||||||||| | ||| | ||||| || || ||||| || |||||||| Sbjct 147625 TTCTGGATGTTGTAATCGGAGAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAAGATC 147684 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||||| ||||| || || || || ||||||||||| ||||| ||| ||| ||| Sbjct 147685 AAACGTTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTGGACTTGACATTGTCG 147744 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || || |||| || || || | |||||| ||||||||||| Sbjct 147745 ATTGTATCCGAGGACTCAACCTCAAGCGTGATGGTCTTGCCCGT 147788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192517066641950