Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq411 286 5e-72 >seq411 Length=256942 Score = 286 bits (316), Expect = 5e-72 Identities = 1200/1879 (64%), Gaps = 33/1879 (2%) Strand=Plus/Plus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 || ||||| || || | || || | |||| || ||||||||||| ||||| || || Sbjct 121118 GTGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGG 121177 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901 |||| |||| || |||||||| || || | ||| ||||||| || Sbjct 121178 CCCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTGTAGGATCCTTCATG 121237 Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961 || || ||||| || ||| |||||| ||| |||| || | ||| || ||||| | | Sbjct 121238 TGGATGTTCATTGATTGAGATTGATCAATGTAAGCACCACGATCGGCAGCCATCTGGACG 121297 Query 76962 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGG 77021 ||||| |||| |||||||| | || ||| | | ||||| ||| |||||| | Sbjct 121298 ATGGTACGCTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATG 121357 Query 77022 TTTGTA---TTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTC 77078 || | | |||||||| ||||||||||||| || ||| ||||||| || | || | Sbjct 121358 TTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGAC 121417 Query 77079 CACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCA 77138 || | | | | || | | | | | | || || || | ||| || |||||| Sbjct 121418 CATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGTTGACGACTTGGAACTCTCCA 121477 Query 77139 GACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 77198 | | || | ||||| ||| || || ||| ||||| || | |||| ||| || Sbjct 121478 GCGAGCACACGACGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCATTCGTTGAACCCA 121537 Query 77199 AAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 77258 | ||||||| ||| ||||| |||||||| || || | ||||| || | || |||| Sbjct 121538 AGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGATACCA 121597 Query 77259 TGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCC 77318 | | |||||| | || ||| | | ||||||||| ||||| | || ||| || Sbjct 121598 TATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGAGATCAGTTGGAGTGACACCC 121657 Query 77319 CAAAGATCGTATTGTAGAATTCCGTTACTAGCATAT-GATCCATTATATGTTTCATAAGG 77377 || | ||||||||| || || || | || | ||||| | ||||| || || || Sbjct 121658 CACATATCGTATTGAAGCTCACCCTT-CGAGACTGGAGATCCCTCGTATGTCTCGTATGG 121716 Query 77378 TCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAA 77437 ||| | | ||| || ||| || ||| || ||| || || || || || Sbjct 121717 TCCAAGCTTCTTAGCGAGATCAACGGAAGCAGTCAAAGCGGCGTGGTAGATAGTCTCAAA 121776 Query 77438 AATCTTCTTATTGAGAT-CTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAA 77496 |||| | ||||||| |||| || ||| || || || | | | | | | Sbjct 121777 GATCTGGATGTTGAGATGCTTG-GCCTCAGGTGACTCGAATGGCAGACGCAGAGCCAAGA 121835 Query 77497 AGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTT 77556 || |||| || | || ||||| |||| | |||||||||| || | ||||| | | Sbjct 121836 AGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAGTTGGATTTCT 121895 Query 77557 TAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTA 77616 | |||||||||| || || || || | || || || || || || || | || || | Sbjct 121896 TTGCTTCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCTTGACCACAA 121955 Query 77617 CTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTATAACA--AACAT--G 77672 | | || || | || || | || ||| | | || | | | ||| | | Sbjct 121956 CCTGGCAGACCTCGTGGAGCTTCTGGAAGTCATAGGTACCGTTGTTCATGTCAACGTAGG 122015 Query 77673 TTCAAAGCT--ATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTA 77730 | |||| || ||||| | ||||| || ||||||| | || || | | Sbjct 122016 TGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGCGGAGTACTCGA 122075 Query 77731 TTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTT 77790 ||||| || || || || | | || || || ||||| | |||||||||||| Sbjct 122076 CAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTTGCTCTTTC 122135 Query 77791 TATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAA 77850 ||||| | ||||| || || || || || | || || || | || | ||||| || Sbjct 122136 GGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCGAGAA 122195 Query 77851 TAGATTTCCAGACGACTCTA-GCTTTTATCATAGATTTGTATCGCCT---CTCTCTTTCA 77906 | || | ||| | | ||| || || || | ||| | | | ||| ||| Sbjct 122196 TGGAGTACCAAA-GTTTCTGTGCCTTGATGGTC---TTGCGACCCTTGCCCTCAGCCTCA 122251 Query 77907 TATTGA--GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATT 77964 || | ||||| |||| || |||||||| || | ||||| | | || ||||| | Sbjct 122252 TACTTCTCGTATAGAGCC--TCGAATTCATCACCATAGACATCTGCAAGACCTGGGCACT 122309 Query 77965 CATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAG 78024 | || |||||||||| || ||| |||| | | ||| || ||||| || ||||| | Sbjct 122310 CGTTGGGGCACATCAGTGTCCATGTGCCATTCTTTTCAACACGCTTCATGAACAGATCTG 122369 Query 78025 GTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTT 78084 | ||||| ||||| || ||||| || | | | |||||| || || ||| ||| Sbjct 122370 GGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGCCGTGATTTTTTC 122429 Query 78085 TAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTC 78144 ||||| || |||| | || ||| | |||||||| || || || || || | | | Sbjct 122430 GGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATGCAC 122489 Query 78145 CAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACA 78204 ||||||| || || || ||||| || | ||||||||| ||||| || | ||||| | || Sbjct 122490 CAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAACACTCTGAGCA 122549 Query 78205 TTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAA 78264 | |||| |||||||| || | || ||||| |||| ||| ||| ||| | || |||| Sbjct 122550 TAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTCGAA 122609 Query 78265 TATTACTAATGGATATC----CCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGT 78320 | | |||| || || || || || || ||||||| || | || ||| Sbjct 122610 TTCTG----TGGACATTGAGACCGATACCACCAGCATTCTTAGAGATCATGGCACAAGTC 122665 Query 78321 TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || | || ||||||||||| || ||||| |||||| |||||| || | || || | Sbjct 122666 TTGAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAATTAAGAAGCACGAA 122725 Query 78381 GACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCAT 78440 || | ||| || || || ||| || | ||| || || || || || || || Sbjct 122726 GAAAGTTGTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTGAAGTAT 122785 Query 78441 TTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCT 78500 || | || | || || ||||| ||||| |||| || || ||| ||||| || Sbjct 122786 TTGCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGATATCCTCGCCGTGAATGCCA 122845 Query 78501 ACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAAC 78560 || ||||||||||| | ||| ||||| || | ||| | || || | | Sbjct 122846 ACTGCTACACGCATGATCATGTGCTGCGGGCGTTCGCAGATTTTGCCATCGAGGCGGAGA 122905 Query 78561 AAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAA 78620 | ||||||| ||| | || || ||||| || || | ||| ||||||| ||||| Sbjct 122906 AGGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAGTCTCGATCGTAG 122965 Query 78621 ATAATAACAGAATTTAGTT 78639 | |||| | ||||| |||| Sbjct 122966 ACAATAGCCGAATTGAGTT 122984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694660767892000