Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq411 300 2e-76 >seq411 Length=256942 Score = 300 bits (332), Expect = 2e-76 Identities = 1205/1878 (64%), Gaps = 31/1878 (2%) Strand=Plus/Plus Query 75377 GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 75436 |||||||| ||||| | || || | |||| || ||||||||||| ||||| || || Sbjct 121118 GTGAACTGGATGGGTGCCGAAGCAGCCATTGTTCGGAGATAGTACATCCCAGTCTTGAGG 121177 Query 75437 CCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATA 75496 |||| |||| || |||||||| || || | ||| | ||||| || Sbjct 121178 CCCAACTTCCAACCTGCAAAATGCATACTGGTGATCTTGCCCATTGTAGGATCCTTCATG 121237 Query 75497 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 75556 || || ||||| || ||| |||||| ||| |||| || | ||| || ||||| | | Sbjct 121238 TGGATGTTCATTGATTGAGATTGATCAATGTAAGCACCACGATCGGCAGCCATCTGGACG 121297 Query 75557 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGA 75616 ||||| |||| |||||||| | || ||| | | ||||| ||| |||||| Sbjct 121298 ATGGTACGCTGAGAGATTTCCCAGACGGTCTTGTAGAGAGCCTTGATGTCAGCTGGAATG 121357 Query 75617 TTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTC 75673 || | | |||||||| || || ||||| | || ||| ||||||| || | || | Sbjct 121358 TTAGGAACATTTTGAATCGAACCACCATCTGCGATGATTCTATTCTTCATGTTGTCTGAC 121417 Query 75674 CACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCA 75733 || | | | || | | | | | | || || || | ||| || |||||| Sbjct 121418 CATAGTCCCATATCAACAAGATCCTTCAACAACCATGGGTTGACGACTTGGAACTCTCCA 121477 Query 75734 GACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 75793 | | || | |||| ||| || || ||| ||||| || | |||| ||| || Sbjct 121478 GCGAGCACACGACGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCATTCGTTGAACCCA 121537 Query 75794 AAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 75853 | ||||||| || ||||| |||||||| || || | ||||| || | || |||| Sbjct 121538 AGAATTTGACTGGTACTGGCAGTGGGCATAGGAGCAACAAGCAAACTGTTGCGGATACCA 121597 Query 75854 TGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCC 75913 | | |||||| | || ||| | | ||||||||| ||||| | ||| ||| || Sbjct 121598 TATTGCTTGATTTGTTGCTTCAGAGAATCCCAATCCCAGAGATCAGTTGGAGTGACACCC 121657 Query 75914 CAGAGATCGTATTGTAGAATTCCGTTGCTAGCATAT-GATCCATTATATGTTTCGTAAGT 75972 || | ||||||||| || || || | || | ||||| | ||||| ||||| | Sbjct 121658 CACATATCGTATTGAAGCTCACCCTT-CGAGACTGGAGATCCCTCGTATGTCTCGTATGG 121716 Query 75973 CCCGTCCTTTTCAGCTAGTTCGCAACTC--GCCTCTAACGCACCGTAATAAATTGTTTCG 76030 || ||| | ||| || || ||| || || || ||| || || || || Sbjct 121717 TCCAAGCTTCTTAGCGAGATC--AACGGAAGCAGTCAAAGCGGCGTGGTAGATAGTCTCA 121774 Query 76031 AAAATCTTCTTATTAAGAT-CTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAAT 76089 || |||| | || |||| |||| || ||| | || || || | | | | | Sbjct 121775 AAGATCTGGATGTTGAGATGCTTG-GCCTCAGGTGACTCGAATGGCAGACGCAGAGCCAA 121833 Query 76090 AAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAAT 76149 || |||| || || || ||||| |||| | |||||||||| || | ||||| | Sbjct 121834 GAAGACATCAGCAAGACCTTGAACACCAAGAGCAATAGGTCTGTGACGGAAGTTGGATTT 121893 Query 76150 TTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAC 76209 | |||||||||| ||||| || || | || || || || || || || |||| || Sbjct 121894 CTTTGCTTCTGGAACTGGGTAGTAGTTGACCTCGATGATCTTGTTCAGGTTCTTGACCAC 121953 Query 76210 TACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATCACA--AACATA 76267 || | || || | || || | || ||| | | || | ||| ||| || Sbjct 121954 AACCTGGCAGACCTCGTGGAGCTTCTGGAAGTCATAGGTACCGTTGTTCATGTCAACGTA 122013 Query 76268 TT----AAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTG 76323 ||| || || ||||| | ||||| || ||||||| | || || | Sbjct 122014 GGTGGGAAGCGCCATGGATGCCAAGTTACAGCAAGCGACCTCATCTGGTGCGGAGTACTC 122073 Query 76324 TATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTT 76383 | ||||| ||||| || || | || || || ||||| | ||||||||||| Sbjct 122074 GACAATCTCAGTGCACAGGTTGGAGCTTCGAATGGTACCGAGATTCTTCTGGTTGCTCTT 122133 Query 76384 TTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGAT 76443 | ||| || | ||||| || || | || || ||||||| || | || | ||||| Sbjct 122134 TCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTTCCAGTCTCGGTTTGGGCTTCGAG 122193 Query 76444 AATAGATTTCCAGACGACTCTA-GCTTTTATTATAGATTTGTATCGCTT---CTCTCTTT 76499 ||| || | ||| | | ||| || || || | ||| | ||| ||| | Sbjct 122194 AATGGAGTACCAAA-GTTTCTGTGCCTTGATGGTC---TTGCGACCCTTGCCCTCAGCCT 122249 Query 76500 CATA-TTGT-GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACA 76557 |||| || | ||||| | || || |||||||| || | ||||| | | ||| || || Sbjct 122250 CATACTTCTCGTATAGAGCC--TCGAATTCATCACCATAGACATCTGCAAGACCTGGGCA 122307 Query 76558 TTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATC 76617 || || || ||||||| || ||| |||| | | ||| || ||||| || ||||| Sbjct 122308 CTCGTTGGGGCACATCAGTGTCCATGTGCCATTCTTTTCAACACGCTTCATGAACAGATC 122367 Query 76618 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTT 76677 || ||||| ||||| || ||||| || | | | |||||| || || ||| || Sbjct 122368 TGGGATCCAGAGAGCGTAGAAGAGATCACGAGCGCGAACTTCTTCCTTGCCGTGATTTTT 122427 Query 76678 TTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAAC 76737 | ||||| ||| |||| | || ||| | |||||||| || || || || || | | Sbjct 122428 TCGGAGATCAAGGTACTCGAAAACATCTGCGTGCCATGGCTCGAGGTAGATGGCGAATGC 122487 Query 76738 ACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAA 76797 ||| ||||| || || || ||||| || | ||||||||||||||| || | ||||| | Sbjct 122488 ACCAGGTCGCTTGTTTCCACCCTGGTCAACATATCTGGCAGTGTTGTTGAACACTCTGAG 122547 Query 76798 CATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACG 76857 ||| |||| || ||||| || | || ||||| |||| ||| ||| ||| || || Sbjct 122548 CATAGGAACGATACCGTTGGAGTTGCCGTTTGTGCCAGCAATGTAAGCTCCGGTGGCTCG 122607 Query 76858 AATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTT 76917 ||| | | | || || || || || || | |||||||| | ||||| || Sbjct 122608 AATTCTGTGGACATTGAGACCGATACCACCAGCATTCTTAGAGATCATGGCACAAGTCTT 122667 Query 76918 CAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGA 76977 | ||||| ||||| || || |||||||||||| |||||| || | || || ||| Sbjct 122668 GAGCGTGTCGTAGATACCATCAATACTATCATCCTTCATGTCAATTAAGAAGCACGAAGA 122727 Query 76978 CATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTT 77037 | ||| || || || ||| || | ||| || || || || ||||| |||| Sbjct 122728 AAGTTGTGCCTGTGGTGTGCCGGCAGCGAAGAGTGTTGGCGAAGCGTGTGTGAAGTATTT 122787 Query 77038 TTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTAC 77097 | || | || || ||||| ||||| |||| || |||||| ||||| || || Sbjct 122788 GCCTGACATCAGGTTATATGTCTCAATTGCTGCCTCGATATCCTCGCCGTGAATGCCAAC 122847 Query 77098 AGCGACACGCATCAACATATGCTGAGGTCGTTCTACAG-TCTTATTATTTATTTTCAACA 77156 || |||||||| | ||| ||||| || ||||| ||| | || || | | | Sbjct 122848 TGCTACACGCATGATCATGTGCTGCGGGCGTTC-GCAGATTTTGCCATCGAGGCGGAGAA 122906 Query 77157 AGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAA 77216 ||||||| ||| | || || ||||| || || | ||| ||||||| ||||| | Sbjct 122907 GGTATGATCGTTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGA 122966 Query 77217 TAATAACCGAATTTAGTT 77234 |||| ||||||| |||| Sbjct 122967 CAATAGCCGAATTGAGTT 122984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712926156696000