Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq61 140 7e-28
seq112 122 2e-22
seq190 104 5e-17
>seq61
Length=91600
Score = 140 bits (154), Expect = 7e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| ||||||||||| ||||| || ||||||||||| |||| | || | || |||
Sbjct 26002 AGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCT 25943
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| || | |||||||| | | || |||||||| |||
Sbjct 25942 TCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGGAATGCCTTCCTTGTCT 25883
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| || |||||| | || | | |||| ||| ||| || || || || || |||
Sbjct 25882 TGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTT 25823
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||||||||| ||||| || |||| ||||||
Sbjct 25822 TTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 25791
>seq112
Length=719005
Score = 122 bits (134), Expect = 2e-22
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | ||| || || ||||| || ||||||||||| || | ||| || | ||||||
Sbjct 202135 AGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGCCCATCC 202194
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || |||||||| || || | ||||||||| | | ||| || ||||| |||
Sbjct 202195 TCAAGTTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATACCCTCCTTATCT 202254
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| || || ||| | || | | | || || ||| || || ||||| || ||
Sbjct 202255 TGAATCTTCGACTTTACATTGTCGATGGTATCAGATGACTCAACCTCCAGAGTGATGGTC 202314
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || || ||||| ||||||| ||||||
Sbjct 202315 TTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 202346
Score = 111 bits (122), Expect = 4e-19
Identities = 145/199 (73%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| || | ||||||||| ||||| ||||||||||||||||| | | || |
Sbjct 202637 GAGGCGGAGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCG 202696
Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
|| || || || ||||| |||||||| || | | ||||| |||| | || |||
Sbjct 202697 ACCGTCCTCGAGCTGCTTT--CCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCT 202754
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063
||||| |||||||| || ||||||| | || | |||| ||| |||||| ||||||
Sbjct 202755 TCCTTGTCTTGAATCTTGGATTTGACATTGTCGATAGTGTCAGAAGACTCTACCTCAAGA 202814
Query 152064 GTAATAGTTTTGCCCGTGA 152082
|| || || || || ||||
Sbjct 202815 GTGATGGTCTTCCCAGTGA 202833
Score = 86.0 bits (94), Expect = 1e-11
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972
||| |||||||||||||| ||| || || | ||||| || | || || |||||
Sbjct 201927 CTCCTTTTGGATGTTGTAGTCGCTCAACGTACGGCCATCCTCCAACTGCTTGCCAGCGAA 201986
Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032
||| | | ||||||||| | | || || ||||| || ||||| ||| || ||| |
Sbjct 201987 GATCAATCGCTGCTGGTCTGGTGGAATACCCTCCTTATCCTGAATCTTTGACTTAACATT 202046
Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092
|| | |||| || ||| || || | |||||||| || || || | |||||||||
Sbjct 202047 ATCAATTGTGTCGGATGACTCAACCTCTAATGTAATAGTCTTTCCAGTCAAAGTCTTCAC 202106
Query 152093 GAAGACCTGCAT 152104
|||| ||||||
Sbjct 202107 AAAGATCTGCAT 202118
>seq190
Length=335796
Score = 104 bits (114), Expect = 5e-17
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| |||||||||||||||| | ||| | ||||| || || || |||||||||||
Sbjct 147625 TTCTGGATGTTGTAATCGGAGAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAAGATC 147684
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
| | |||||||||| | |||||| ||||| |||||||| || |||||| | ||
Sbjct 147685 AAACGTTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTGGACTTGACATTGTCG 147744
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096
| | || || ||| || ||||| || || || |||||||| || ||||| ||||||
Sbjct 147745 ATTGTATCCGAGGACTCAACCTCAAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAG 147804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153807125420675
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |