Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq61 140 7e-28 seq112 122 2e-22 seq190 104 5e-17 >seq61 Length=91600 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||||||||| ||||| || ||||||||||| |||| | || | || ||| Sbjct 26002 AGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCT 25943 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | |||||||| | | || |||||||| ||| Sbjct 25942 TCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGGAATGCCTTCCTTGTCT 25883 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || |||||| | || | | |||| ||| ||| || || || || || ||| Sbjct 25882 TGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATGGTT 25823 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| ||||| || |||| |||||| Sbjct 25822 TTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 25791 >seq112 Length=719005 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| || || ||||| || ||||||||||| || | ||| || | |||||| Sbjct 202135 AGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGCCCATCC 202194 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || |||||||| || || | ||||||||| | | ||| || ||||| ||| Sbjct 202195 TCAAGTTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATACCCTCCTTATCT 202254 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| | || | | | || || ||| || || ||||| || || Sbjct 202255 TGAATCTTCGACTTTACATTGTCGATGGTATCAGATGACTCAACCTCCAGAGTGATGGTC 202314 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| ||||||| |||||| Sbjct 202315 TTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 202346 Score = 111 bits (122), Expect = 4e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||||||| ||||| ||||||||||||||||| | | || | Sbjct 202637 GAGGCGGAGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCG 202696 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| |||||||| || | | ||||| |||| | || ||| Sbjct 202697 ACCGTCCTCGAGCTGCTTT--CCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCT 202754 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| |||||||| || ||||||| | || | |||| ||| |||||| |||||| Sbjct 202755 TCCTTGTCTTGAATCTTGGATTTGACATTGTCGATAGTGTCAGAAGACTCTACCTCAAGA 202814 Query 152064 GTAATAGTTTTGCCCGTGA 152082 || || || || || |||| Sbjct 202815 GTGATGGTCTTCCCAGTGA 202833 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| |||||||||||||| ||| || || | ||||| || | || || ||||| Sbjct 201927 CTCCTTTTGGATGTTGTAGTCGCTCAACGTACGGCCATCCTCCAACTGCTTGCCAGCGAA 201986 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| | | ||||||||| | | || || ||||| || ||||| ||| || ||| | Sbjct 201987 GATCAATCGCTGCTGGTCTGGTGGAATACCCTCCTTATCCTGAATCTTTGACTTAACATT 202046 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | |||| || ||| || || | |||||||| || || || | ||||||||| Sbjct 202047 ATCAATTGTGTCGGATGACTCAACCTCTAATGTAATAGTCTTTCCAGTCAAAGTCTTCAC 202106 Query 152093 GAAGACCTGCAT 152104 |||| |||||| Sbjct 202107 AAAGATCTGCAT 202118 >seq190 Length=335796 Score = 104 bits (114), Expect = 5e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || |||||||||||||||| | ||| | ||||| || || || ||||||||||| Sbjct 147625 TTCTGGATGTTGTAATCGGAGAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAAGATC 147684 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | |||||||||| | |||||| ||||| |||||||| || |||||| | || Sbjct 147685 AAACGTTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTGGACTTGACATTGTCG 147744 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | || || ||| || ||||| || || || |||||||| || ||||| |||||| Sbjct 147745 ATTGTATCCGAGGACTCAACCTCAAGCGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAG 147804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153807125420675