Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq112 163 6e-35 seq61 158 3e-33 seq190 140 7e-28 >seq112 Length=719005 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| |||| ||| | ||| || || |||||||||||||||| Sbjct 202119 ACCACCACGCAGACGAAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGA 202178 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| |||||||| ||||| || ||||| || || | || || ||||| || Sbjct 202179 TAAGGTGCGCCCATCCTCAAGTTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGG 202238 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| ||||| ||||| | ||||| | ||||| || || || | || || Sbjct 202239 GATACCCTCCTTATCTTGAATCTTCGACTTTACATTGTCGATGGTATCAGATGACTCAAC 202298 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 202299 CTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 202346 Score = 156 bits (172), Expect = 9e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| ||| | ||| || |||||||||||||| |||| Sbjct 202628 ACCACCACGGAGGCGGAGAACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGA 202687 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| || ||||| || || || ||||| || ||||||||||| || || || Sbjct 202688 GAGGGTGCGACCGTCCTCGAGCTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGG 202747 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||||||||| ||||| | ||| || | ||||||||||| |||| || || Sbjct 202748 AATGCCTTCCTTGTCTTGAATCTTGGATTTGACATTGTCGATAGTGTCAGAAGACTCTAC 202807 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || |||||||| ||||| || || Sbjct 202808 CTCAAGAGTGATGGTCTTCCCAGT 202831 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| || | ||||| || ||||||||||||||||| Sbjct 201891 ACCACCACGAAGACGCAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCT 201950 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| ||||||||||| | || || || || |||||||| || || ||||| || Sbjct 201951 CAACGTACGGCCATCCTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGG 202010 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||| || || ||||||| || || |||| || ||||| || | || || Sbjct 202011 AATACCCTCCTTATCCTGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAAC 202070 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || ||||| || ||||||||||| || || |||||||| Sbjct 202071 CTCTAATGTAATAGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | || || || || ||||||||||| | Sbjct 202347 ACCACCACGGAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGA 202406 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || || || || || || || || |||||||| | |||||| ||||| || Sbjct 202407 AAGGGTACGACCGTCTTCGAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCTGGTGG 202466 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||| ||||| ||||| | || ||| |||||||||||||||||| || || Sbjct 202467 AATACCCTCCTTATCTTGAATCTTCGACTTGACGTTATCGATAGTGTCCGAAGACTCTAC 202526 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 ||| | || || ||||| || || | |||||||||| Sbjct 202527 TTCTAACGTAATGGTCTTTCCGGTAAGGGTCTTAACGA 202564 >seq61 Length=91600 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || || ||||| | || || || |||||||||||||| | Sbjct 26017 CCTCCACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAG 25958 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| || || ||||| || || || ||||| | |||||| |||||| ||| Sbjct 25957 AGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGGA 25898 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||| ||||| | || || | ||||| |||||||||| || || Sbjct 25897 ATGCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAAGACTCAACC 25838 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| || || ||||| | ||||| || || |||||||| Sbjct 25837 TCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 25791 >seq190 Length=335796 Score = 140 bits (154), Expect = 7e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 282906 CTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCA 282965 ||| | || ||||||||||| || | || ||||| |||||||| ||||| || ||||| Sbjct 147619 CTTACCTTCTGGATGTTGTAATCGGAGAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCG 147678 Query 282966 AAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACG 283025 |||||||||||||| ||||| || || |||||||||||||| ||||| | || || Sbjct 147679 AAGATCAAACGTTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTGGACTTGACA 147738 Query 283026 GTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTA 283085 | ||||| || ||||| | || || || || ||||| ||||| ||||| | ||||| Sbjct 147739 TTGTCGATTGTATCCGAGGACTCAACCTCAAGCGTGATGGTCTTGCCCGTAAGGGTCTTG 147798 Query 283086 ACGAA 283090 ||||| Sbjct 147799 ACGAA 147803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046726794504950