Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10-
27] 925 sequences; 42,813,648 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq112 132 3e-26
seq61 120 2e-22
seq190 105 5e-18
>seq112
Length=719005
Score = 132 bits (146), Expect = 3e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184
|||||||| ||| || ||||||||||||||||||||||| ||| | || | ||
Sbjct 201906 CAACACCAAGTGCAGTGTGCTCTCCTTTTGGATGTTGTAGTCGCTCAACGTACGGCCATC 201965
Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
|||| |||||| || || |||||||| |||||||| |||| || | ||| ||||| ||
Sbjct 201966 CTCCAACTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGTGGAATACCCTCCTTATC 202025
Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304
| ||||| ||| | | | || ||||||| || || ||||| | ||||| ||
Sbjct 202026 CTGAATCTTTGACTTAACATTATCAATTGTGTCGGATGACTCAACCTCTAATGTAATAGT 202085
Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||| || | |||||||| ||||| |||||
Sbjct 202086 CTTTCCAGTCAAAGTCTTCACAAAGATCTGCAT 202118
Score = 105 bits (116), Expect = 5e-18
Identities = 151/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| || || ||| |||||| ||||||||||| || | | |||| | || ||
Sbjct 202138 ACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGCCCATCCTCA 202197
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| ||||| || || | |||||||| |||| || | ||| ||||| ||
Sbjct 202198 AGTTGCTTGCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATACCCTCCTTATCTTGA 202257
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|||||| ||| || ||| | ||||| || | || || ||||||| || || ||||
Sbjct 202258 ATCTTCGACTTTACATTGT--CGATGGTATCAGATGACTCAACCTCCAGAGTGATGGTCT 202315
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || || |||||||| |||||||| |||||
Sbjct 202316 TGCCAGTCAGGGTCTTGACGAAGATCTGCAT 202346
Score = 105 bits (116), Expect = 5e-18
Identities = 138/189 (73%), Gaps = 4/189 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| ||||| ||| ||||||||||||||||||||| | ||| ||| |||| ||
Sbjct 202647 ACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAGAGGGTGCGACCGTCCTCG 202706
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| || |||||||| |||||||| | ||| | |||||||| ||
Sbjct 202707 AGCTGCTTTCCGGCGAAAATCAAACGTTGCTGATCCGGAGGAATGCCTTCCTTGTCTTGA 202766
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| || || ||| | || ||||| | || || ||||| | || || ||||
Sbjct 202767 ATCTTGGATTTGACATTGT--CGATAGTGTCAGAAGACTCTACCTCAAGAGTGATGGTCT 202824
Query 44307 TTCCCGTGA 44315
| || ||||
Sbjct 202825 TCCCAGTGA 202833
>seq61
Length=91600
Score = 120 bits (132), Expect = 2e-22
Identities = 168/234 (72%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169
||| || | ||| | || || || ||||| || |||||| ||||||||||| ||||
Sbjct 26018 TCCTCCACGCAGACGCAGGACGAGATGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGA 25959
Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229
||| ||| |||| || || ||||| || || ||||| | ||| ||||| || | ||
Sbjct 25958 GAGGGTGCGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATTAGACGTTGCTGGTCAGGTGG 25899
Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCC 44287
| |||||||| || ||||| ||| || ||| | |||||||| | || ||
Sbjct 25898 AATGCCTTCCTTGTCTTGAATCTTGGACTTGACATTGT--CGATGGTGTCCGAAGACTCA 25841
Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341
||||| | || || || || |||||||||||||| || ||||| |||||||||
Sbjct 25840 ACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATGATG 25787
>seq190
Length=335796
Score = 105 bits (116), Expect = 5e-18
Identities = 135/184 (73%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| |||||||||||||||| ||| ||| | || || || ||||| ||||| ||||
Sbjct 147623 CCTTCTGGATGTTGTAATCGGAGAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAAGA 147682
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||||||| ||||| || | || | || ||||| || ||||| ||| || |||
Sbjct 147683 TCAAACGTTGCTGGTCCGGTGGGATTCCCTCCTTGTCTTGAATCTTGGACTTGACATTGT 147742
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || || || | ||| || ||||| | ||| || ||||| ||||| |||||||| ||
Sbjct 147743 --CGATTGTATCCGAGGACTCAACCTCAAGCGTGATGGTCTTGCCCGTAAGGGTCTTGAC 147800
Query 44326 GAAG 44329
||||
Sbjct 147801 GAAG 147804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359986341670725
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |