Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20repandus_20[genbank_20GCA_5F001414415.1_202015-10- 27] 925 sequences; 42,813,648 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq61 147 5e-30 seq190 138 3e-27 seq112 132 1e-25 >seq61 Length=91600 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || ||||| |||||||||||||| || || ||| Sbjct 25794 CAGATCTTTGTCAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGTCTTCGGAC 25853 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||| ||||| ||||| || || || ||||||||| Sbjct 25854 ACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGCATTCCACCTGACCAGCAA 25913 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || || || ||||| || | || || |||| || ||| || Sbjct 25914 CGTCTAATCTTCGCTGGCAAGCAACTTGAAGACGGCCGCACCCTCTCCGACTACAACATC 25973 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || ||||| || ||||| || Sbjct 25974 CAGAAGGAGTCAACTCTTCATCTCGT 25999 >seq190 Length=335796 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || || || || || || ||||| || ||||| || ||| || || ||| Sbjct 147803 TTCGTCAAGACCCTTACGGGCAAGACCATCACGCTTGAGGTTGAGTCCTCGGATACAATC 147744 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| |||||||| ||||| || |||||||| |||||||||||||| | Sbjct 147743 GACAATGTCAAGTCCAAGATTCAAGACAAGGAGGGAATCCCACCGGACCAGCAACGTTTG 147684 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || || ||||| |||||| | ||||| ||||||| ||| |||| || Sbjct 147683 ATCTTCGCCGGCAAGCAACTCGAGGATGGACGCACTCTCTCCGATTACAACATCCAGAA 147625 >seq112 Length=719005 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || ||||| || ||||| || || ||||| ||||| || |||||| Sbjct 202833 TCACTGGGAAGACCATCACTCTTGAGGTAGAGTCTTCTGACACTATCGACAATGTCAAAT 202774 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||||| ||||| ||||| || |||||||| |||||||| | || |||||||||| Sbjct 202773 CCAAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAGCAACGTTTGATTTTCGCCGGAA 202714 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | |||||||| || || | || || | ||||| ||| ||||||| || || || || | Sbjct 202713 AGCAGCTCGAGGACGGTCGCACCCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTTC 202654 Query 178123 ATCTTGTT 178130 || | ||| Sbjct 202653 ATTTGGTT 202646 Score = 111 bits (122), Expect = 4e-19 Identities = 144/198 (73%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || || || ||||| || || || | || || || || ||||| |||| Sbjct 202564 TCGTTAAGACCCTTACCGGAAAGACCATTACGTTAGAAGTAGAGTCTTCGGACACTATCG 202505 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | |||||||| |||||||| || || || || || || || ||||||||||| |||| Sbjct 202504 ATAACGTCAAGTCGAAGATTCAAGATAAGGAGGGTATTCCACCAGACCAGCAACGTCTTA 202445 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| || || || ||||||||||| || | || ||| |||| || ||| | || || | Sbjct 202444 TCTTTGCTGGTAAGCAGCTCGAAGACGGTCGTACCCTTTCCGACTACAACATTCAGAAGG 202385 Query 178111 AATCAACACTGCATCTTG 178128 | || || || || |||| Sbjct 202384 AGTCGACCCTTCA-CTTG 202368 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||| | || ||||| || || || | ||||| || || ||| Sbjct 202115 CAGATCTTTGTGAAGACTTTGACTGGAAAGACTATTACATTAGAGGTTGAGTCATCCGAC 202056 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || |||||||||||| || || || || || || |||||||| Sbjct 202055 ACAATTGATAATGTTAAGTCAAAGATTCAGGATAAGGAGGGTATTCCACCAGACCAGCAG 201996 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || ||| | || ||||| | || | ||| || ||| || Sbjct 201995 CGATTGATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGTACGTTGAGCGACTACAACATC 201936 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || |||||||| |||| Sbjct 201935 CAAAAGGAGAGCACACTGCA-CTTG 201912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203716933904450