Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2965 96.9 4e-15 >seq2965 Length=6591 Score = 96.9 bits (106), Expect = 4e-15 Identities = 200/295 (68%), Gaps = 7/295 (2%) Strand=Plus/Minus Query 17228 TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCT 17287 || || ||||| ||||||||||| ||| ||| | || ||||| ||||||||||| Sbjct 5694 TCCATAATATAGGTATCGATGAGGAGGGAGTATGTCTCAGAGTGGATGTTCTCCATCATG 5635 Query 17288 ATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC 17347 || || || ||||| ||| ||||||| || | ||||| ||||| | ||| || || Sbjct 5634 ATTTGGAAACCGTAGAAGAATCGGGCCTCTGGGATTTGGACTTCACTGCTGAAGCGCTCG 5575 Query 17348 GCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATG 17407 || || ||||| || || |||||| || ||||| || || | | || ||| Sbjct 5574 AGGAGGTTCTCGTTGACAATTCCGTCGGAGGCAGCGAAGAAAGCGAGGACGTGGGAGATG 5515 Query 17408 AAATATTTTTCGTC--CGGTGTAAG---AACGCGCCAGTCCTTTAAATCTTTGGATATAT 17462 || || |||||| || || || | |||||| | | ||| ||||| | || Sbjct 5514 AAGTAGCGTTCGTCATCGTTG--AGCTTGTTGTTCCAGTCGTGGAGATCCTTGGAAAGAT 5457 Query 17463 CCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 | | ||||||| |||||| ||| ||| | ||||| || ||||| | ||| || Sbjct 5456 CAATCTCTTCGGCGGTCCAGAAAGAAGCTTCGGCCTTCTTGTACATTTGCCAGAT 5402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517482530599320