Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq2965 96.9 4e-15
>seq2965
Length=6591
Score = 96.9 bits (106), Expect = 4e-15
Identities = 200/295 (68%), Gaps = 7/295 (2%)
Strand=Plus/Minus
Query 17228 TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCT 17287
|| || ||||| ||||||||||| ||| ||| | || ||||| |||||||||||
Sbjct 5694 TCCATAATATAGGTATCGATGAGGAGGGAGTATGTCTCAGAGTGGATGTTCTCCATCATG 5635
Query 17288 ATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC 17347
|| || || ||||| ||| ||||||| || | ||||| ||||| | ||| || ||
Sbjct 5634 ATTTGGAAACCGTAGAAGAATCGGGCCTCTGGGATTTGGACTTCACTGCTGAAGCGCTCG 5575
Query 17348 GCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATG 17407
|| || ||||| || || |||||| || ||||| || || | | || |||
Sbjct 5574 AGGAGGTTCTCGTTGACAATTCCGTCGGAGGCAGCGAAGAAAGCGAGGACGTGGGAGATG 5515
Query 17408 AAATATTTTTCGTC--CGGTGTAAG---AACGCGCCAGTCCTTTAAATCTTTGGATATAT 17462
|| || |||||| || || || | |||||| | | ||| ||||| | ||
Sbjct 5514 AAGTAGCGTTCGTCATCGTTG--AGCTTGTTGTTCCAGTCGTGGAGATCCTTGGAAAGAT 5457
Query 17463 CCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517
| | ||||||| |||||| ||| ||| | ||||| || ||||| | ||| ||
Sbjct 5456 CAATCTCTTCGGCGGTCCAGAAAGAAGCTTCGGCCTTCTTGTACATTTGCCAGAT 5402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517482530599320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |