Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2965 141 1e-28 seq5294 107 2e-18 >seq2965 Length=6591 Score = 141 bits (156), Expect = 1e-28 Identities = 341/513 (66%), Gaps = 5/513 (1%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 |||||||| ||| | ||||| || ||||| || || || || || | | || || || Sbjct 6303 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 6244 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAA-AT 23962 |||||||| ||| |||| |||| ||| || || | ||||| | | || | ||| | Sbjct 6243 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAAC-CTTTTCATTACCGAGAGAGAGGAG 6185 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 | | ||| ||||| ||||| || ||| ||||||| | ||||| || | ||| Sbjct 6184 GAGCCGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAG 6125 Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 | ||||||||| |||| | || ||||| ||||| || || || || || | Sbjct 6124 AGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGAC 6065 Query 24083 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 24142 | | |||| | | | ||| || ||| | || || || | | |||||||| Sbjct 6064 GGCTTGGACTGCTGCCTTACTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCGAA 6005 Query 24143 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 24202 ||| ||| ||||||||||| | || || |||||||| || || || || | ||| Sbjct 6004 GTCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCAT 5945 Query 24203 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 24262 ||||||||||| || | ||| || ||||| || || || ||| ||||| || || || Sbjct 5944 GAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTC 5885 Query 24263 TACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCACTT 24319 || || |||||||||| || | || || | | | |||| || ||||| Sbjct 5884 AACGGCAGCAAAGGCAACGAGACGTTGAGCAAAGGTAGACTCCTTGTCTTGGATCCATCG 5825 Query 24320 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 |||||||||||||||||| || | ||||| Sbjct 5824 GACAGCCCAATCGGCCTTCTTCTTGATGCAAGG 5792 >seq5294 Length=3402 Score = 107 bits (118), Expect = 2e-18 Identities = 315/482 (65%), Gaps = 5/482 (1%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||| || || || || || || | | ||||| |||||||||||||| || || ||| Sbjct 641 GTGAACTGGATAGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTGAGA 582 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTA-GTTTGGAATAACTCGGATCTGCTAT 52926 || | |||| || ||||||||||| || | || || | || || | || Sbjct 581 CCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTACCCATGGTTGGGTCCTTC-AT 523 Query 52927 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 52986 ||||| ||||| |||||| ||| || || || || || | ||| |||||||| | | Sbjct 522 GTGGATGTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAAC 463 Query 52987 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 53046 || || ||||| |||||||||| ||| || || | ||| ||||| |||| | Sbjct 462 AATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGAT 403 Query 53047 GTTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 53103 ||||| ||| || || ||||||||||| | || || | ||||| || | ||| Sbjct 402 GTTTGGAACATTTTGGATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTATCGGA 343 Query 53104 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 53163 ||| | | | || | | | | || || || || || ||||| || ||||| Sbjct 342 CCAGAGTCCCATATCAACAAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCC 283 Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 53223 || | || | ||||| ||| || || ||| || || || | |||| || ||| Sbjct 282 AGCAAGAACACGCCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGAATCC 223 Query 53224 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 53283 | || ||| ||| ||||| |||||||| || || | ||||| || | | ||| Sbjct 222 AAGGATCTGACTAGTACTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACC 163 Query 53284 GT 53285 || Sbjct 162 GT 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593649247601520