Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq2965 141 1e-28
seq5294 107 2e-18
>seq2965
Length=6591
Score = 141 bits (156), Expect = 1e-28
Identities = 341/513 (66%), Gaps = 5/513 (1%)
Strand=Plus/Minus
Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903
|||||||| ||| | ||||| || ||||| || || || || || | | || || ||
Sbjct 6303 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 6244
Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAA-AT 23962
|||||||| ||| |||| |||| ||| || || | ||||| | | || | ||| |
Sbjct 6243 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAAC-CTTTTCATTACCGAGAGAGAGGAG 6185
Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022
| | ||| ||||| ||||| || ||| ||||||| | ||||| || | |||
Sbjct 6184 GAGCCGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAG 6125
Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082
| ||||||||| |||| | || ||||| ||||| || || || || || |
Sbjct 6124 AGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGAC 6065
Query 24083 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 24142
| | |||| | | | ||| || ||| | || || || | | ||||||||
Sbjct 6064 GGCTTGGACTGCTGCCTTACTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCGAA 6005
Query 24143 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 24202
||| ||| ||||||||||| | || || |||||||| || || || || | |||
Sbjct 6004 GTCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCAT 5945
Query 24203 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 24262
||||||||||| || | ||| || ||||| || || || ||| ||||| || || ||
Sbjct 5944 GAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTC 5885
Query 24263 TACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCACTT 24319
|| || |||||||||| || | || || | | | |||| || |||||
Sbjct 5884 AACGGCAGCAAAGGCAACGAGACGTTGAGCAAAGGTAGACTCCTTGTCTTGGATCCATCG 5825
Query 24320 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352
|||||||||||||||||| || | |||||
Sbjct 5824 GACAGCCCAATCGGCCTTCTTCTTGATGCAAGG 5792
>seq5294
Length=3402
Score = 107 bits (118), Expect = 2e-18
Identities = 315/482 (65%), Gaps = 5/482 (1%)
Strand=Plus/Minus
Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867
||||| || || || || || || | | ||||| |||||||||||||| || || |||
Sbjct 641 GTGAACTGGATAGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTGAGA 582
Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTA-GTTTGGAATAACTCGGATCTGCTAT 52926
|| | |||| || ||||||||||| || | || || | || || | ||
Sbjct 581 CCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTACCCATGGTTGGGTCCTTC-AT 523
Query 52927 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 52986
||||| ||||| |||||| ||| || || || || || | ||| |||||||| | |
Sbjct 522 GTGGATGTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAAC 463
Query 52987 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 53046
|| || ||||| |||||||||| ||| || || | ||| ||||| |||| |
Sbjct 462 AATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGAT 403
Query 53047 GTTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 53103
||||| ||| || || ||||||||||| | || || | ||||| || | |||
Sbjct 402 GTTTGGAACATTTTGGATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTATCGGA 343
Query 53104 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 53163
||| | | | || | | | | || || || || || ||||| || |||||
Sbjct 342 CCAGAGTCCCATATCAACAAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCC 283
Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 53223
|| | || | ||||| ||| || || ||| || || || | |||| || |||
Sbjct 282 AGCAAGAACACGCCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGAATCC 223
Query 53224 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 53283
| || ||| ||| ||||| |||||||| || || | ||||| || | | |||
Sbjct 222 AAGGATCTGACTAGTACTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACC 163
Query 53284 GT 53285
||
Sbjct 162 GT 161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593649247601520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |