Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1973 91.5 1e-13 >seq1973 Length=9094 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | || |||||||| || || || ||||| | Sbjct 5906 CCACCACGGAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAG 5847 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||| || || ||||| ||| | ||||| | ||| |||||| || Sbjct 5846 AGTGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAAGATAAGGCGCTGTTGGTCCGGTGGG 5787 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| || || | | ||| ||||||| || || | Sbjct 5786 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCACTGGATTCGACT 5727 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163 || | || ||||||||||| || || || ||||| Sbjct 5726 TCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTGAC 5692 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | ||||||| |||||||||| ||||||||||||||| ||||| Sbjct 6363 TCCTCCACGAAGGCGAAGCACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTCGCT 6304 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 ||||| | | ||||||| || ||||| || |||| | || ||| || ||| || Sbjct 6303 GAGGGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGG 6244 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | || ||||| || ||||||| || || | | | || || | ||| Sbjct 6243 AATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAAC 6184 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| ||||| ||||||||||| | || || || || || ||||| Sbjct 6183 TTCCAATGTAATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 6136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422209028877284