Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 91.5 1e-13
>seq1973
Length=9094
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| |||| || | || |||||||| || || || ||||| |
Sbjct 5906 CCACCACGGAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAG 5847
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || ||||||| || || ||||| ||| | ||||| | ||| |||||| ||
Sbjct 5846 AGTGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAAGATAAGGCGCTGTTGGTCCGGTGGG 5787
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| ||||| || || | | ||| ||||||| || || |
Sbjct 5786 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCACTGGATTCGACT 5727
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163
|| | || ||||||||||| || || || |||||
Sbjct 5726 TCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTGAC 5692
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007
||| || || || | ||||||| |||||||||| ||||||||||||||| |||||
Sbjct 6363 TCCTCCACGAAGGCGAAGCACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTCGCT 6304
Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067
||||| | | ||||||| || ||||| || |||| | || ||| || ||| ||
Sbjct 6303 GAGGGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGG 6244
Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127
| || ||||| || ||||||| || || | | | || || | |||
Sbjct 6243 AATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAAC 6184
Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| ||||| ||||||||||| | || || || || || |||||
Sbjct 6183 TTCCAATGTAATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 6136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422209028877284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |