Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2965 143 3e-29 seq1973 120 3e-22 seq47 91.5 2e-13 >seq2965 Length=6591 Score = 143 bits (158), Expect = 3e-29 Identities = 207/286 (72%), Gaps = 7/286 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| |||||||| || || |||||||||| ||| ||| | || || Sbjct 5402 ATCTGGCAAATGTACAAGAAGGCCGAAGCTTCTTTCTGGACCGCCGAAGAGATTGATCTT 5461 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | | | ||||| |||| ||| | |||||| Sbjct 5462 TCCAAGGATCTCCA-CGACTGGAACAACAAGCTCAACGATGACGAACGCTACTTCATCTC 5520 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||||| || || || ||||| ||| |||||| || ||||||||||| || ||||||| Sbjct 5521 CCACGTCCTCGCTTTCTTCGCTGCCTCCGACGGAATTGTCAACGAGAACCTCCTCGAGCG 5580 Query 116812 TTTCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 ||| ||| || || || | | ||||| || | ||||||||| || || ||| | Sbjct 5581 CTTC-AGCAGTGAAGTCCAAATCCCAGAGGCCCGATTCTTCTACGGTTTCCAAATCATGA 5639 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 |||||||| | ||||| || | || || ||||||||| || || Sbjct 5640 TGGAGAACATCCACTCTGAGACATACTCCCTCCTCATCGATACCTA 5685 Score = 132 bits (146), Expect = 5e-26 Identities = 271/400 (68%), Gaps = 2/400 (1%) Strand=Plus/Plus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028 || ||| |||| |||||||||| ||||| | || |||||| | || ||| | || Sbjct 5792 CCTTGCATCAAGAAGAAGGCCGATTGGGCTGTCCGATGGATCCAAGACAAGGAGTCTACC 5851 Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 || | | || || || ||||| || ||||| ||||| ||||||| || |||| Sbjct 5852 TTTGCTCAACGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCTTTC 5911 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 || |||| || ||| | ||||| || ||||||||| | || || || ||| ||||||| Sbjct 5912 GCATCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAG 5971 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | |||||| | ||||||||||| || |||||| || || | || ||| || ||| Sbjct 5972 TTGATCTCCCGTGACGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTCCCACTTG 6031 Query 117209 GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAG 117268 ||| || || || ||| ||| | || ||||||| || || | || ||| Sbjct 6032 AAGCATCGCCCAAGTAAGGCAGCAGTCCAAGCCGTCATCACCGAGGCTGTTGAGATTGAG 6091 Query 117269 CAGCGCTTCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGAT 117327 || ||| | || || || || || |||| ||| || || | || | | ||| Sbjct 6092 CAAGAGTTCTTGACTGAGGCTCTTCCTTGTGC-TCTTCTCGGCATGAACGCCAACTTGAT 6150 Query 117328 GTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTC 117367 | ||||||||| ||||||||||| || |||| || ||| Sbjct 6151 GAAGCAATACATTGAGTTCGTCGCTGATCGGCTCCTCCTC 6190 >seq1973 Length=9094 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| |||||||| |||| |||||| | | Sbjct 5908 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACTCTCGAGGTCGAATCTTCA 5967 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| ||| || | || || ||||| || || |||| || Sbjct 5968 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCGGATCAA 6027 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||| | ||| ||||| || || || |||| ||||| ||| ||||||||| Sbjct 6028 CAGCGACTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACACTCTCCGACTACAAT 6087 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||||| | || || ||| Sbjct 6088 ATCCAGAAGGAGTCTACCCTTCAT 6111 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || | || ||||| |||||||| |||| |||||| ||| || | | | Sbjct 5690 TCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTCGAATCCAGTGATACCATCG 5749 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | ||||| || |||| ||||| ||||||||||| ||||||| || || || | Sbjct 5750 ACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCACCGGACCAACAGCGCCTTA 5809 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| || ||||| || || || |||| ||||| ||| ||||||||| |||||||||| Sbjct 5810 TCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACACTCTCCGACTACAATATCCAGAAGG 5869 Query 40880 AGGCCACGCTGCA 40892 || | || || || Sbjct 5870 AGTCTACCCTTCA 5882 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| || || ||||||||| |||| || || | | |||| | | | |||| ||||| Sbjct 5418 TCACCGGTAAGACCATCACCCTCGAGGTAGAGTCGTCGGACACCATAGACAACG-TCAAG 5476 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| ||||| |||||| | ||||||||||| | |||| || || Sbjct 5477 AGCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAACGCTTGATCTTTGCCGGA 5536 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | || || || || |||||||| ||||||||| | || || Sbjct 5537 AAGCAGCTCGAGGATGGTCGTACTCTATCTGATTACAACATTCAGAAGGAGTCGACTCTC 5596 Query 40891 CATCTAGT 40898 || || || Sbjct 5597 CACCTCGT 5604 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || || || | || || || | | Sbjct 6136 ATGCAGATCTTCGTTAAGACTCTGACCGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 6195 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| ||| || | || || ||||| || || |||| || Sbjct 6196 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCGGATCAA 6255 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | || | ||| ||||| || |||| || | || ||||||| |||||||||| Sbjct 6256 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCGTACCCTCAGCGACTACAAC 6315 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 || || |||||| ||| ||||| | ||| | ||| Sbjct 6316 ATTCAAAAGGAGAGCACTTTGCATTTGGTGCTTCGC 6351 >seq47 Length=33200 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||||||||| ||||||||| | || || || | | |||| | | | | | ||| Sbjct 24102 TCACGGGCAAGACCATCACCCTAGAGGTTGAGTCTTCGGACACCATCGATAATGTTAAGT 24161 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || |||| ||||| ||||| || || |||| || || || | |||| ||| || | Sbjct 24162 CCAAGATTCAGGACAAGGAGGGAATTCCACCGGATCAACAGCGTTTGATCTTCGCTGGAA 24221 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | || || || |||| || ||||| ||||||||||||||||||||| | || || | Sbjct 24222 AGCAACTCGAGGACGGACGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTC 24281 Query 40892 ATCTAGTGTTGCG 40904 |||| || || || Sbjct 24282 ATCTCGTCTTACG 24294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515156414100240