Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq47 87.8 2e-12 seq1973 86.0 5e-12 >seq47 Length=33200 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| || | || || |||||||| || |||||| Sbjct 24276 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGTCCGTCCTCGAGTTGCTTTCCA 24217 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||| ||||| || || || ||||||||||| ||| || ||| Sbjct 24216 GCGAAGATCAAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGAATCTTGGACTTA 24157 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || | |||| |||||||| ||| ||||| | ||| | || ||||| || Sbjct 24156 ACATTATCGATGGTGTCCGAAGACTCAACCTCTAGGGTGATGGTCTTGCCCGT 24104 >seq1973 Length=9094 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || |||||||||||||| | ||| || |||||||||||| Sbjct 5599 GTGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGATAGAGTACGACCATCCTCGAGCTG 5540 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||| || |||| | || ||||| || || || || ||||||||||| || || Sbjct 5539 CTTTCCGGCAAAGATCAAGCGTTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTT 5480 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||||| ||| ||||||| ||| | || || ||||| Sbjct 5479 GCTCTTGACGTTGTCTATGGTGTCCGACGACTCTACCTCGAGGGTGATGGTCTTACCGGT 5420 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | || ||| |||||||||||||| ||||| | || || |||||| Sbjct 6345 CACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTCGCTGAGGGTACGACCATCCTC 6286 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | || || || ||| | || | ||||| ||||| || || || |||||||| || Sbjct 6285 CAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTG 6226 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | || | ||||||| ||| || || | || | || || Sbjct 6225 GATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTT 6166 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||||||| || || || |||||||| Sbjct 6165 GCCGGTCAGAGTCTTAACGAAGATCTGCAT 6136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433778854034308