Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1973 138 9e-28 seq47 96.9 3e-15 >seq1973 Length=9094 Score = 138 bits (152), Expect = 9e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| |||| ||||||||||| ||||||||||||||| | || ||| | || ||| Sbjct 6344 ACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTCGCTGAGGGTACGACCATCCTCC 6285 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| || |||||||| ||||| |||||||| || || || | ||||||||| ||| Sbjct 6284 AATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGG 6225 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | ||||| | ||| || |||| ||||| |||||| Sbjct 6224 ATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTG 6165 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||||||| || ||||| ||||| Sbjct 6164 CCGGTCAGAGTCTTAACGAAGATCTGCAT 6136 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||| || ||||||||| ||| ||| |||| || Sbjct 6116 ACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTCCTCG 6057 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || |||||||| || | |||||||| || || || | ||||||||| ||| Sbjct 6056 AGTTGCTTGCCGGCGAAAATGAGTCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGG 5997 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | |||| | || ||||| | || || |||||| Sbjct 5996 ATCTTTGACTTGACATTATCAATTGTGTCTGAAGATTCGACCTCGAGAGTGATGGTCTTG 5937 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| || ||||||||||| Sbjct 5936 CCGGTAAGAGTCTTGACGAAGATTTGCAT 5908 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| || ||||||||| ||| ||| |||| || Sbjct 5888 ACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTCCTCG 5829 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || ||||| || || | ||||||||||| || || | |||||||||||| | Sbjct 5828 AGTTGCTTGCCGGCAAAGATAAGGCGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGA 5769 Query 45248 ATTTT 45252 || || Sbjct 5768 ATCTT 5764 >seq47 Length=33200 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || || |||| || ||||| ||||| ||||| Sbjct 24271 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGTCCGTCCTCGAGTTGCTTTCCAGCGAA 24212 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| |||||||| || || || | |||||||||||| ||| || |||||| Sbjct 24211 GATCAAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGAATCTTGGACTTAACATT 24152 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | | | ||||| | ||| ||||| | ||| || ||||||||||| Sbjct 24151 ATCGATGGTGTCCGAAGACTCAACCTCTAGGGTGATGGTCTTGCCCGT 24104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395028258769729