Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1315 298 5e-76 seq2965 84.2 2e-11 seq1973 82.4 7e-11 >seq1315 Length=11532 Score = 298 bits (330), Expect = 5e-76 Identities = 578/844 (68%), Gaps = 7/844 (1%) Strand=Plus/Plus Query 23031 CAAGATTGCATACGGCCACCTCGTCTT-TGGACGTGTACTCTACAATTTCGGTACATAGA 23089 |||| ||||| || || ||||| || || || ||| || ||||| || ||||| | Sbjct 330 CAAG-TTGCAAACAGCAACCTCATCAGGTGCACA-GTATTCGACAATCTCAGTACACAAG 387 Query 23090 TTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTG 23149 ||| | | || || || | ||| | |||||||| ||||| ||||| | ||||||| Sbjct 388 TTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTG 447 Query 23150 TAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTC 23209 || |||||| | || | || ||||| || | ||||| ||| | ||| | | Sbjct 448 TAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTT 507 Query 23210 TGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTC 23268 || || | | | | ||| ||| ||| || |||||| || | ||||| || || Sbjct 508 TGGGCCTTGATGCTTTT-ACGACCCTTGCCCTCAGACTCGTATTTCTCATACAAAGCCTC 566 Query 23269 AAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCA 23328 || ||| ||||||| |||||||| ||| || | | | || ||||| | |||| Sbjct 567 GAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGGGCACATCAATGTCCA 626 Query 23329 CATTGAG-TCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACA 23387 | ||| | |||||||| || |||| || ||||| || ||||| ||||||||||| | Sbjct 627 G-TCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGA 685 Query 23388 GTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACA 23447 | || ||||| || |||||||| || ||| ||||||| | || | || || || | Sbjct 686 GATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAA 745 Query 23448 CGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCT 23507 | || || ||||| ||||| ||||||| ||| || || || || | ||| || || || | Sbjct 746 CATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACGCTTGTTACCACCTT 805 Query 23508 GATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACG 23567 |||| || || ||||| ||||||||| | |||| ||||| || |||| |||||||| Sbjct 806 GATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATTCCGTTGGAGT 865 Query 23568 CGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTA 23627 ||| | || || | | ||| |||| || | ||||||| | || ||| | Sbjct 866 TTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCACGGATTCTGTGAACATTGAGACCAA 925 Query 23628 TGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGA 23687 | || || | || || ||||| || || |||| ||||| ||||| || || | Sbjct 926 TACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGTGTCATAGATACCATCAA 985 Query 23688 TGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGG 23747 |||||||||| || | ||| | ||| || || || | ||| |||| || ||| | | Sbjct 986 TGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGTGCTTGTGGTGTACCAG 1045 Query 23748 CCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGT 23807 | | ||| ||||| || |||||| || |||||| | ||||| | ||||| || | Sbjct 1046 CAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGACATCAAGTTGTAGGTCT 1105 Query 23808 CGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATT 23867 ||||||| || ||||| ||||| ||||| || |||| ||||| ||||| ||||| | || Sbjct 1106 CGATGGCAGCCTCAATATCCTCACCGTGGATTCCGACAGCGACACGCATAATCATATGTT 1165 Query 23868 GAGG 23871 | || Sbjct 1166 GTGG 1169 >seq2965 Length=6591 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || || || ||||| || ||||| ||||| || || || | || || ||| || Sbjct 5870 GCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCATCCATCTTCTGGTTG 5929 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| || ||||| ||| | || || || || |||||||||||| || || |||||| Sbjct 5930 AAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTCCCGTGACGAG 5989 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139 |||||||| || || || || ||||| | | ||| ||| Sbjct 5990 GGTCTCCACACCGACTTCGCATGCCTTCTCTTCTCCCAC 6028 >seq1973 Length=9094 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| ||||| || || || | || ||||| | || Sbjct 6136 ATGCAGATCTTCGTTAAGACTCTGACCGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 6195 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | ||| ||||| || | || || || || Sbjct 6196 GACACAATTGATAATGTCAAGTCAAAGA-TCCAGGATAAGGAGGGTATTCCACCGGATCA 6254 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| | || ||||| ||||| || ||||| || | || | ||||| || || Sbjct 6255 ACAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCGTACCCTCAGCGACTACAA 6314 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||||||| || ||| | ||| |||| ||| Sbjct 6315 CATTCAAAAGGAGAGCACTTTGCATTTGGTGCTT 6348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445712077792080