Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 298 5e-76
seq2965 84.2 2e-11
seq1973 82.4 7e-11
>seq1315
Length=11532
Score = 298 bits (330), Expect = 5e-76
Identities = 578/844 (68%), Gaps = 7/844 (1%)
Strand=Plus/Plus
Query 23031 CAAGATTGCATACGGCCACCTCGTCTT-TGGACGTGTACTCTACAATTTCGGTACATAGA 23089
|||| ||||| || || ||||| || || || ||| || ||||| || ||||| |
Sbjct 330 CAAG-TTGCAAACAGCAACCTCATCAGGTGCACA-GTATTCGACAATCTCAGTACACAAG 387
Query 23090 TTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTG 23149
||| | | || || || | ||| | |||||||| ||||| ||||| | |||||||
Sbjct 388 TTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTG 447
Query 23150 TAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTC 23209
|| |||||| | || | || ||||| || | ||||| ||| | ||| | |
Sbjct 448 TAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTT 507
Query 23210 TGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTC 23268
|| || | | | | ||| ||| ||| || |||||| || | ||||| || ||
Sbjct 508 TGGGCCTTGATGCTTTT-ACGACCCTTGCCCTCAGACTCGTATTTCTCATACAAAGCCTC 566
Query 23269 AAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCA 23328
|| ||| ||||||| |||||||| ||| || | | | || ||||| | ||||
Sbjct 567 GAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGGGCACATCAATGTCCA 626
Query 23329 CATTGAG-TCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACA 23387
| ||| | |||||||| || |||| || ||||| || ||||| ||||||||||| |
Sbjct 627 G-TCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGA 685
Query 23388 GTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACA 23447
| || ||||| || |||||||| || ||| ||||||| | || | || || || |
Sbjct 686 GATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAA 745
Query 23448 CGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCT 23507
| || || ||||| ||||| ||||||| ||| || || || || | ||| || || || |
Sbjct 746 CATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACGCTTGTTACCACCTT 805
Query 23508 GATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACG 23567
|||| || || ||||| ||||||||| | |||| ||||| || |||| ||||||||
Sbjct 806 GATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATTCCGTTGGAGT 865
Query 23568 CGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTA 23627
||| | || || | | ||| |||| || | ||||||| | || ||| |
Sbjct 866 TTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCACGGATTCTGTGAACATTGAGACCAA 925
Query 23628 TGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGA 23687
| || || | || || ||||| || || |||| ||||| ||||| || || |
Sbjct 926 TACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGTGTCATAGATACCATCAA 985
Query 23688 TGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGG 23747
|||||||||| || | ||| | ||| || || || | ||| |||| || ||| | |
Sbjct 986 TGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGTGCTTGTGGTGTACCAG 1045
Query 23748 CCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGT 23807
| | ||| ||||| || |||||| || |||||| | ||||| | ||||| || |
Sbjct 1046 CAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGACATCAAGTTGTAGGTCT 1105
Query 23808 CGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATT 23867
||||||| || ||||| ||||| ||||| || |||| ||||| ||||| ||||| | ||
Sbjct 1106 CGATGGCAGCCTCAATATCCTCACCGTGGATTCCGACAGCGACACGCATAATCATATGTT 1165
Query 23868 GAGG 23871
| ||
Sbjct 1166 GTGG 1169
>seq2965
Length=6591
Score = 84.2 bits (92), Expect = 2e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040
|| || || ||||| || ||||| ||||| || || || | || || ||| ||
Sbjct 5870 GCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCATCCATCTTCTGGTTG 5929
Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100
||||| || ||||| ||| | || || || || |||||||||||| || || ||||||
Sbjct 5930 AAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTCCCGTGACGAG 5989
Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139
|||||||| || || || || ||||| | | ||| |||
Sbjct 5990 GGTCTCCACACCGACTTCGCATGCCTTCTCTTCTCCCAC 6028
>seq1973
Length=9094
Score = 82.4 bits (90), Expect = 7e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||||||||| ||||| || || || | || ||||| | ||
Sbjct 6136 ATGCAGATCTTCGTTAAGACTCTGACCGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 6195
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | ||||| || ||| | ||| ||||| || | || || || ||
Sbjct 6196 GACACAATTGATAATGTCAAGTCAAAGA-TCCAGGATAAGGAGGGTATTCCACCGGATCA 6254
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||| | || ||||| ||||| || ||||| || | || | ||||| || ||
Sbjct 6255 ACAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCGTACCCTCAGCGACTACAA 6314
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
||||||||| || ||| | ||| |||| |||
Sbjct 6315 CATTCAAAAGGAGAGCACTTTGCATTTGGTGCTT 6348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445712077792080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |