Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq2965 129 1e-24
seq2320 116 7e-21
seq1315 89.7 1e-12
>seq2965
Length=6591
Score = 129 bits (142), Expect = 1e-24
Identities = 164/225 (73%), Gaps = 3/225 (1%)
Strand=Plus/Plus
Query 101851 CATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGAT---TTGGC 101907
|||||||||||||| | |||||| | ||||| ||| ||| | | || ||
Sbjct 5797 CATCAAGAAGAAGGCCGATTGGGCTGTCCGATGGATCCAAGACAAGGAGTCTACCTTTGC 5856
Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967
||| | |||||||||||||| ||||| || |||||||| |||||| | ||||||||
Sbjct 5857 TCAACGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCATC 5916
Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027
||| |||||| | ||||| | || | || ||||||| |||| |||||| ||||| ||
Sbjct 5917 CATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGAT 5976
Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072
|| | ||||| ||||| || |||||| |||||| | || ||
Sbjct 5977 CTCCCGTGACGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTT 6021
>seq2320
Length=8091
Score = 116 bits (128), Expect = 7e-21
Identities = 206/296 (70%), Gaps = 6/296 (2%)
Strand=Plus/Minus
Query 35327 ATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGAT 35386
||| | |||||| ||| || || ||||| |||| | ||||| ||| ||| | |
Sbjct 4650 ATAAAAATCTGGGACGGAAACGGATCGCGAGAATACCTCGACAGCGTAGGCCTATCCCAC 4591
Query 35387 AGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAA 35446
| || | ||||| | || || || ||||| ||||||||||| |||||||| || |||
Sbjct 4590 CGCGCCGTCGGAGACCTAGGTCCAGTCTACGGCTTCCAATGGCGCCATTTTGGGGCCGAA 4531
Query 35447 TATGATACCTG-TTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATA--TA 35503
|||| || || | | |||||||| || |||||| | ||||| || ||| | |
Sbjct 4530 TATG-TAGATGCCACAACTGATTATACGGGCAAGGGTGTCGATCAGTT--ACAAGAGGTT 4474
Query 35504 CTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCT 35563
| | | |||| | || || |||||||| |||| ||| ||| || ||||||||
Sbjct 4473 ATCGATAAGTTGAGGAATAACCCGTATGATAGACGGATTATTTTGAGTGCGTGGAATCCG 4414
Query 35564 ATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619
| |||||| | |||||||| || || || || || ||| ||| || ||||||||
Sbjct 4413 AGGGATCTGAAACTTATGGCGCTGCCGCCTTGTCATATGTTTGCGCAGTTTTATGT 4358
>seq1315
Length=11532
Score = 89.7 bits (98), Expect = 1e-12
Identities = 120/168 (71%), Gaps = 12/168 (7%)
Strand=Plus/Plus
Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451
||| ||||| |||| ||| |||||||| ||||| |||| ||||| || || | ||||||
Sbjct 528 ACCCTTGCCCTCAGACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTC 587
Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCAAT------TCTTCCCAGCCTT 94505
|| | |||||| ||||||| |||||||||| | ||| | |||| ||
Sbjct 588 GGCCAAGCCAGGACACTCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCA----- 642
Query 94506 CACTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553
|| | || |||||||||||| | | ||||| ||| ||| |||||
Sbjct 643 -ACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGAGATC 689
Score = 87.8 bits (96), Expect = 4e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 94831 GTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGT 94890
|| ||||| ||||| |||||||| || || | | | | | ||||||||| || ||||||
Sbjct 967 GTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGT 1026
Query 94891 TGGGGT-GTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCT 94949
|| | | ||| ||| ||| | || ||||| || || || ||||| || || | ||
Sbjct 1027 TGTGCTTGTGG-TGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCT 1085
Query 94950 CGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGC 95009
||||| | | || || || ||| ||| | || || ||||| || ||||||||
Sbjct 1086 GGACATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGATTCCGACAGC 1145
Query 95010 CACACGCATAATCAT 95024
||||||||||||||
Sbjct 1146 GACACGCATAATCAT 1160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989460391990295
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |