Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2965 129 1e-24 seq2320 116 7e-21 seq1315 89.7 1e-12 >seq2965 Length=6591 Score = 129 bits (142), Expect = 1e-24 Identities = 164/225 (73%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 101851 CATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGAT---TTGGC 101907 |||||||||||||| | |||||| | ||||| ||| ||| | | || || Sbjct 5797 CATCAAGAAGAAGGCCGATTGGGCTGTCCGATGGATCCAAGACAAGGAGTCTACCTTTGC 5856 Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967 ||| | |||||||||||||| ||||| || |||||||| |||||| | |||||||| Sbjct 5857 TCAACGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCATC 5916 Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 ||| |||||| | ||||| | || | || ||||||| |||| |||||| ||||| || Sbjct 5917 CATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGAT 5976 Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 || | ||||| ||||| || |||||| |||||| | || || Sbjct 5977 CTCCCGTGACGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTT 6021 >seq2320 Length=8091 Score = 116 bits (128), Expect = 7e-21 Identities = 206/296 (70%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 35327 ATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGAT 35386 ||| | |||||| ||| || || ||||| |||| | ||||| ||| ||| | | Sbjct 4650 ATAAAAATCTGGGACGGAAACGGATCGCGAGAATACCTCGACAGCGTAGGCCTATCCCAC 4591 Query 35387 AGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAA 35446 | || | ||||| | || || || ||||| ||||||||||| |||||||| || ||| Sbjct 4590 CGCGCCGTCGGAGACCTAGGTCCAGTCTACGGCTTCCAATGGCGCCATTTTGGGGCCGAA 4531 Query 35447 TATGATACCTG-TTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATA--TA 35503 |||| || || | | |||||||| || |||||| | ||||| || ||| | | Sbjct 4530 TATG-TAGATGCCACAACTGATTATACGGGCAAGGGTGTCGATCAGTT--ACAAGAGGTT 4474 Query 35504 CTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCT 35563 | | | |||| | || || |||||||| |||| ||| ||| || |||||||| Sbjct 4473 ATCGATAAGTTGAGGAATAACCCGTATGATAGACGGATTATTTTGAGTGCGTGGAATCCG 4414 Query 35564 ATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 | |||||| | |||||||| || || || || || ||| ||| || |||||||| Sbjct 4413 AGGGATCTGAAACTTATGGCGCTGCCGCCTTGTCATATGTTTGCGCAGTTTTATGT 4358 >seq1315 Length=11532 Score = 89.7 bits (98), Expect = 1e-12 Identities = 120/168 (71%), Gaps = 12/168 (7%) Strand=Plus/Plus Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451 ||| ||||| |||| ||| |||||||| ||||| |||| ||||| || || | |||||| Sbjct 528 ACCCTTGCCCTCAGACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTC 587 Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCAAT------TCTTCCCAGCCTT 94505 || | |||||| ||||||| |||||||||| | ||| | |||| || Sbjct 588 GGCCAAGCCAGGACACTCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCA----- 642 Query 94506 CACTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553 || | || |||||||||||| | | ||||| ||| ||| ||||| Sbjct 643 -ACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGAGATC 689 Score = 87.8 bits (96), Expect = 4e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 94831 GTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGT 94890 || ||||| ||||| |||||||| || || | | | | | ||||||||| || |||||| Sbjct 967 GTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGT 1026 Query 94891 TGGGGT-GTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCT 94949 || | | ||| ||| ||| | || ||||| || || || ||||| || || | || Sbjct 1027 TGTGCTTGTGG-TGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCT 1085 Query 94950 CGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGC 95009 ||||| | | || || || ||| ||| | || || ||||| || |||||||| Sbjct 1086 GGACATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGATTCCGACAGC 1145 Query 95010 CACACGCATAATCAT 95024 |||||||||||||| Sbjct 1146 GACACGCATAATCAT 1160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989460391990295