Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1315 181 1e-40 seq2965 127 3e-24 seq5294 116 5e-21 >seq1315 Length=11532 Score = 181 bits (200), Expect = 1e-40 Identities = 565/865 (65%), Gaps = 16/865 (2%) Strand=Plus/Plus Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 63001 |||| ||||||| || || || || ||||||| || | | || |||| | ||||| Sbjct 319 GCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGG-TGCACAGTATTCGACAATCTC 377 Query 63002 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63061 ||| || | || | | ||| || || | ||| | ||| || |||||| ||| || Sbjct 378 AGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCA 437 Query 63062 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63121 |||||||| ||||| ||||| || | || || ||| | |||| || | || | | Sbjct 438 AGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGTA 497 Query 63122 CCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTATAGAG 63177 ||| | | | ||||| || | ||| | |||| | || |||||| Sbjct 498 CCAAAGCTTTTGGGCCTTGATGCT---TTTACGAC-CCTTGCCCTCAGACTCGTATTTCT 553 Query 63178 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGAC 63237 |||||| ||||||||||| || | || | | |||| | |||||| || | || | Sbjct 554 CATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGGGC 613 Query 63238 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63297 ||||||| | ||| || || | | || || ||||| |||||||| |||||||| | Sbjct 614 ACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGA 673 Query 63298 GAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63357 |||| || ||||| | | | | ||||| ||||| |||||| || |||| Sbjct 674 GAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGA 733 Query 63358 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63417 ||||| | | || ||||| ||||| || || | ||| ||||| | | | ||||| || | Sbjct 734 GGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACGCT 793 Query 63418 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63477 |||| || || ||||| | |||| |||||||| || |||||| | ||| |||| | Sbjct 794 TGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGA 853 Query 63478 TACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTA- 63536 | ||||| || | || || ||||| | || || | || | ||||| || | | Sbjct 854 TTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCACGGATTCTGTGAA 913 Query 63537 -ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63595 |||| ||||| || || || || | || || || | || || || || ||||| Sbjct 914 CATTG--AGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGTGTC 971 Query 63596 ATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63655 |||||| || || ||||| || || |||||| | || || || || | ||| Sbjct 972 ATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGTGC 1031 Query 63656 ACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63715 | | || || ||| || | || || || ||||| || || |||| || | Sbjct 1032 TTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGACAT 1091 Query 63716 TAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACAC 63774 | ||||| ||||| || || | || |||||| || | || ||||| || ||||||| Sbjct 1092 CAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCG-TGGATTCCGACAGCGACAC 1150 Query 63775 GCATTAACATGTGCTGAGGTCTTTC 63799 |||| | ||| || || || | ||| Sbjct 1151 GCATAATCATATGTTGTGGACGTTC 1175 >seq2965 Length=6591 Score = 127 bits (140), Expect = 3e-24 Identities = 292/437 (67%), Gaps = 2/437 (0%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||||||| ||| | ||||| || ||||| || || || ||||| | | || || || Sbjct 6303 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 6244 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAA-AT 33409 |||||||| || || || |||| ||| ||||||| |||| | | || | ||| | Sbjct 6243 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTTTCAT-TACCGAGAGAGAGGAG 6185 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 | | ||| |||||||| || || ||| ||||||| | ||||| || | || Sbjct 6184 GAGCCGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAG 6125 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 | ||||||||| |||| | || ||||| ||||| || || | || || | Sbjct 6124 AGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGAC 6065 Query 33530 AAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAA 33589 | || | | | | ||| || |||| || || || | | |||||||| Sbjct 6064 GGCTTGGACTGCTGCCTTACTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCGAA 6005 Query 33590 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCAT 33649 ||| ||| ||||||||||| | || || ||||| || || || || || | ||| Sbjct 6004 GTCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCAT 5945 Query 33650 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTC 33709 ||||||||||| || | ||| || ||||| ||||| || || |||||||| || || Sbjct 5944 GAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTC 5885 Query 33710 TACTGCAGCAAAGGCAA 33726 || ||||||||||||| Sbjct 5884 AACGGCAGCAAAGGCAA 5868 >seq5294 Length=3402 Score = 116 bits (128), Expect = 5e-21 Identities = 317/482 (66%), Gaps = 5/482 (1%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||| || || || || || || | | ||||| |||||||||||||| || || ||| Sbjct 641 GTGAACTGGATAGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTGAGA 582 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAACTCGGATCTGCTAT 62164 || | |||| || ||||||||||| || | || || | || || | || Sbjct 581 CCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTACCCATGGTTGGGTCCTTC-AT 523 Query 62165 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62224 ||||| ||||| |||||| ||| || || || || || | ||| |||||||| | | Sbjct 522 GTGGATGTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAAC 463 Query 62225 GATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62284 || || ||||| |||||||||| ||| || || | ||| ||||| |||| | Sbjct 462 AATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGAT 403 Query 62285 GTTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 62341 ||||| ||| || || ||||||||||| | || || | ||||| || | ||| Sbjct 402 GTTTGGAACATTTTGGATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTATCGGA 343 Query 62342 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCC 62401 ||| | | | || | | | | || || ||||| || |||||||| ||||| Sbjct 342 CCAGAGTCCCATATCAACAAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCC 283 Query 62402 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62461 || | || | ||||| ||| || || ||| || || || | |||| || ||| Sbjct 282 AGCAAGAACACGCCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGAATCC 223 Query 62462 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521 | || ||| ||| ||||| |||||||| || || | ||||| || | | ||| Sbjct 222 AAGGATCTGACTAGTACTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACC 163 Query 62522 GT 62523 || Sbjct 162 GT 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629740848852720