Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 181 1e-40
seq2965 127 3e-24
seq5294 116 5e-21
>seq1315
Length=11532
Score = 181 bits (200), Expect = 1e-40
Identities = 565/865 (65%), Gaps = 16/865 (2%)
Strand=Plus/Plus
Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 63001
|||| ||||||| || || || || ||||||| || | | || |||| | |||||
Sbjct 319 GCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGG-TGCACAGTATTCGACAATCTC 377
Query 63002 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63061
||| || | || | | ||| || || | ||| | ||| || |||||| ||| ||
Sbjct 378 AGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCA 437
Query 63062 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63121
|||||||| ||||| ||||| || | || || ||| | |||| || | || | |
Sbjct 438 AGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGTA 497
Query 63122 CCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTATAGAG 63177
||| | | | ||||| || | ||| | |||| | || ||||||
Sbjct 498 CCAAAGCTTTTGGGCCTTGATGCT---TTTACGAC-CCTTGCCCTCAGACTCGTATTTCT 553
Query 63178 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGAC 63237
|||||| ||||||||||| || | || | | |||| | |||||| || | || |
Sbjct 554 CATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGGGC 613
Query 63238 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63297
||||||| | ||| || || | | || || ||||| |||||||| |||||||| |
Sbjct 614 ACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGA 673
Query 63298 GAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63357
|||| || ||||| | | | | ||||| ||||| |||||| || ||||
Sbjct 674 GAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGA 733
Query 63358 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63417
||||| | | || ||||| ||||| || || | ||| ||||| | | | ||||| || |
Sbjct 734 GGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACGCT 793
Query 63418 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63477
|||| || || ||||| | |||| |||||||| || |||||| | ||| |||| |
Sbjct 794 TGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGA 853
Query 63478 TACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTA- 63536
| ||||| || | || || ||||| | || || | || | ||||| || | |
Sbjct 854 TTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCACGGATTCTGTGAA 913
Query 63537 -ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63595
|||| ||||| || || || || | || || || | || || || || |||||
Sbjct 914 CATTG--AGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGTGTC 971
Query 63596 ATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63655
|||||| || || ||||| || || |||||| | || || || || | |||
Sbjct 972 ATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGTGC 1031
Query 63656 ACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63715
| | || || ||| || | || || || ||||| || || |||| || |
Sbjct 1032 TTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGACAT 1091
Query 63716 TAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACAC 63774
| ||||| ||||| || || | || |||||| || | || ||||| || |||||||
Sbjct 1092 CAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCG-TGGATTCCGACAGCGACAC 1150
Query 63775 GCATTAACATGTGCTGAGGTCTTTC 63799
|||| | ||| || || || | |||
Sbjct 1151 GCATAATCATATGTTGTGGACGTTC 1175
>seq2965
Length=6591
Score = 127 bits (140), Expect = 3e-24
Identities = 292/437 (67%), Gaps = 2/437 (0%)
Strand=Plus/Minus
Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350
|||||||| ||| | ||||| || ||||| || || || ||||| | | || || ||
Sbjct 6303 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 6244
Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAA-AT 33409
|||||||| || || || |||| ||| ||||||| |||| | | || | ||| |
Sbjct 6243 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTTTCAT-TACCGAGAGAGAGGAG 6185
Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469
| | ||| |||||||| || || ||| ||||||| | ||||| || | ||
Sbjct 6184 GAGCCGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAG 6125
Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529
| ||||||||| |||| | || ||||| ||||| || || | || || |
Sbjct 6124 AGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGAC 6065
Query 33530 AAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAA 33589
| || | | | | ||| || |||| || || || | | ||||||||
Sbjct 6064 GGCTTGGACTGCTGCCTTACTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCGAA 6005
Query 33590 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCAT 33649
||| ||| ||||||||||| | || || ||||| || || || || || | |||
Sbjct 6004 GTCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCAT 5945
Query 33650 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTC 33709
||||||||||| || | ||| || ||||| ||||| || || |||||||| || ||
Sbjct 5944 GAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTC 5885
Query 33710 TACTGCAGCAAAGGCAA 33726
|| |||||||||||||
Sbjct 5884 AACGGCAGCAAAGGCAA 5868
>seq5294
Length=3402
Score = 116 bits (128), Expect = 5e-21
Identities = 317/482 (66%), Gaps = 5/482 (1%)
Strand=Plus/Minus
Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105
||||| || || || || || || | | ||||| |||||||||||||| || || |||
Sbjct 641 GTGAACTGGATAGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTGAGA 582
Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAACTCGGATCTGCTAT 62164
|| | |||| || ||||||||||| || | || || | || || | ||
Sbjct 581 CCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTACCCATGGTTGGGTCCTTC-AT 523
Query 62165 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62224
||||| ||||| |||||| ||| || || || || || | ||| |||||||| | |
Sbjct 522 GTGGATGTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAAC 463
Query 62225 GATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62284
|| || ||||| |||||||||| ||| || || | ||| ||||| |||| |
Sbjct 462 AATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGAT 403
Query 62285 GTTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 62341
||||| ||| || || ||||||||||| | || || | ||||| || | |||
Sbjct 402 GTTTGGAACATTTTGGATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTATCGGA 343
Query 62342 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCC 62401
||| | | | || | | | | || || ||||| || |||||||| |||||
Sbjct 342 CCAGAGTCCCATATCAACAAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCC 283
Query 62402 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62461
|| | || | ||||| ||| || || ||| || || || | |||| || |||
Sbjct 282 AGCAAGAACACGCCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGAATCC 223
Query 62462 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521
| || ||| ||| ||||| |||||||| || || | ||||| || | | |||
Sbjct 222 AAGGATCTGACTAGTACTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACC 163
Query 62522 GT 62523
||
Sbjct 162 GT 161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629740848852720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |