Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1315 178 2e-39 seq2965 132 6e-26 seq5294 113 6e-20 >seq1315 Length=11532 Score = 178 bits (196), Expect = 2e-39 Identities = 570/874 (65%), Gaps = 14/874 (2%) Strand=Plus/Plus Query 65736 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 65794 |||| ||||||| || ||||| || ||||||| || | | || |||| | ||||| Sbjct 319 GCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGG-TGCACAGTATTCGACAATCTC 377 Query 65795 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 65854 ||| || | || | | |||||| || | ||| | ||| || |||||| ||| || Sbjct 378 AGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCA 437 Query 65855 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 65914 |||||||| ||||| ||||| || | || || ||| | |||| || | || | | Sbjct 438 AGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGTA 497 Query 65915 CCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTC-TCTT--TCGTATAGTGT 65971 ||| | | | ||||| || | ||| | ||| | || |||||| Sbjct 498 CCAAAGCTTTTGGGCCTTGATGCT---TTTACGACCCTTGCCCTCAGACTCGTATTTCTC 554 Query 65972 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 66031 |||||| ||||||||||| || | || | | |||| |||||||| || | || || Sbjct 555 ATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGGGCA 614 Query 66032 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 66091 |||||| | ||| || || | | || || ||||| |||||||| |||||||| || Sbjct 615 CATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAG 674 Query 66092 AGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 66151 ||| || | ||| | || | | ||||| ||||| |||||| || ||||| Sbjct 675 AGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAG 734 Query 66152 GAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 66211 |||| | | || |||| ||||| || || | ||| ||||| | | | ||||| || || Sbjct 735 GAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACGCTT 794 Query 66212 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 66271 ||| || || ||||| | |||| |||||||| || |||||| | ||| |||| || Sbjct 795 GTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGAT 854 Query 66272 ACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA-- 66329 || ||||| | || || || || | || || || ||||||| || | | Sbjct 855 TCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCACGGATTCTGTGAAC 914 Query 66330 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 66389 |||| ||||| || || || || | || || || | || || || || || ||| Sbjct 915 ATTG--AGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGTGTCA 972 Query 66390 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 66449 ||||| || || || || || ||| |||||| | || || || || | ||| Sbjct 973 TAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGTGCT 1032 Query 66450 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 66509 | || || ||| || | || || || ||||| || || |||| || | Sbjct 1033 TGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGACATC 1092 Query 66510 AGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACG 66568 | ||||| ||||| || || | || |||||| || | || ||||| || |||||||| Sbjct 1093 AAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCG-TGGATTCCGACAGCGACACG 1151 Query 66569 CATTAACATGTGCTGAGGTCTTTCAACGATCTTG 66602 ||| | ||| || || || | ||| ||||||| Sbjct 1152 CATAATCATATGTTGTGGACGTTCGCAGATCTTG 1185 >seq2965 Length=6591 Score = 132 bits (146), Expect = 6e-26 Identities = 293/437 (67%), Gaps = 2/437 (0%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 |||||||| ||| | ||||| || ||||| || || || || || | | || || || Sbjct 6303 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 6244 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAA-AT 35985 |||||||| |||||||| ||| ||| || |||| |||| | | || | ||| | Sbjct 6243 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTTTCAT-TACCGAGAGAGAGGAG 6185 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 | | ||| ||||| || || || ||| ||||||| | ||||| || | ||| Sbjct 6184 GAGCCGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAG 6125 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 | ||||||||| |||| | || ||||| ||||| || || || || || | Sbjct 6124 AGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGAC 6065 Query 36106 AGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 36165 | | |||| | | | ||| || ||| | || || || | | |||||||| Sbjct 6064 GGCTTGGACTGCTGCCTTACTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCGAA 6005 Query 36166 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 36225 ||| ||| ||||||||||| | || || |||||||| || || || || | ||| Sbjct 6004 GTCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCAT 5945 Query 36226 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 36285 ||||||||||| || | ||| || ||||| || || || ||| ||||| || || || Sbjct 5944 GAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTC 5885 Query 36286 TACTGCCGCAAAGGCAA 36302 || || |||||||||| Sbjct 5884 AACGGCAGCAAAGGCAA 5868 >seq5294 Length=3402 Score = 113 bits (124), Expect = 6e-20 Identities = 316/482 (66%), Gaps = 5/482 (1%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||| || || || || || || | | ||||| |||||||||||||| || || ||| Sbjct 641 GTGAACTGGATAGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTGAGA 582 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAACTCGGATCTGCTAT 64957 || | |||| || ||||||||||| || | || || | || || | || Sbjct 581 CCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTACCCATGGTTGGGTCCTTC-AT 523 Query 64958 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 65017 ||||| ||||| |||||| ||| || || || || || | ||| |||||||| | | Sbjct 522 GTGGATGTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAAC 463 Query 65018 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 65077 || || ||||| |||||||||| ||| || || | ||| ||||| |||| | Sbjct 462 AATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGAT 403 Query 65078 GTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 65134 ||||| ||| || || ||||||||||| || || || | ||||| || | ||| Sbjct 402 GTTTGGAACATTTTGGATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTATCGGA 343 Query 65135 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 65194 ||| | | | || | | | | || || || || || ||||| || ||||| Sbjct 342 CCAGAGTCCCATATCAACAAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCC 283 Query 65195 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 65254 || | || | ||||| ||| || || ||| || || || | |||| || ||| Sbjct 282 AGCAAGAACACGCCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGAATCC 223 Query 65255 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 65314 | || ||| ||| ||||| |||||||| || || | ||||| || | | ||| Sbjct 222 AAGGATCTGACTAGTACTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACC 163 Query 65315 GT 65316 || Sbjct 162 GT 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658092593417160