Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_003494.1
Length=111362
Score E
Sequences producing significant alignments: (Bits) Value
seq2965 93.3 3e-14
>seq2965
Length=6591
Score = 93.3 bits (102), Expect = 3e-14
Identities = 257/392 (66%), Gaps = 4/392 (1%)
Strand=Plus/Plus
Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799
||||||| | |||||||| || ||||| || || | || ||| || || || ||||
Sbjct 5860 ACGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCATCCAT 5919
Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859
|||||| ||||||| ||| |||||| | || | | || ||||||||||||||
Sbjct 5920 CTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTC 5979
Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACA- 22918
||||||||| ||||| ||| ||||| || || | || || || || || ||
Sbjct 5980 CCGTGACGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTCCCACTTG--AAGCAT 6037
Query 22919 -AACCGTGTCAGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCT 22977
|| || ||| | | || |||| | || || ||||| |||||| |
Sbjct 6038 CGCCCAAGTAAGGCAGCAGTCCAAGCCGTCATCACCGAGGCTGTTGAGATTGAGCAAGAG 6097
Query 22978 TTCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTG 23037
||||| ||||| || | || || || ||||| || |||| |
Sbjct 6098 TTCTTGACTGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACGCCAACTTGATGAAGCAA 6157
Query 23038 TACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAAC 23097
||||| |||| || || ||||| || ||| | || ||| ||| |||| | || ||
Sbjct 6158 TACATTGAGTTCGTCGCTGATCGGCTCCTCCTCTCTCTCGGTAATGAAAAGGTTTACAAG 6217
Query 23098 GTTGCCAATCCATTTGATTTCATGGATAACAT 23129
|||||||| ||||| || |||||||| |||||
Sbjct 6218 GTTGCCAACCCATTCGACTTCATGGAGAACAT 6249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356191273770847
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |