Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq2965 93.3 3e-14 >seq2965 Length=6591 Score = 93.3 bits (102), Expect = 3e-14 Identities = 257/392 (66%), Gaps = 4/392 (1%) Strand=Plus/Plus Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799 ||||||| | |||||||| || ||||| || || | || ||| || || || |||| Sbjct 5860 ACGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCATCCAT 5919 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 |||||| ||||||| ||| |||||| | || | | || |||||||||||||| Sbjct 5920 CTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTC 5979 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACA- 22918 ||||||||| ||||| ||| ||||| || || | || || || || || || Sbjct 5980 CCGTGACGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTCCCACTTG--AAGCAT 6037 Query 22919 -AACCGTGTCAGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCT 22977 || || ||| | | || |||| | || || ||||| |||||| | Sbjct 6038 CGCCCAAGTAAGGCAGCAGTCCAAGCCGTCATCACCGAGGCTGTTGAGATTGAGCAAGAG 6097 Query 22978 TTCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTG 23037 ||||| ||||| || | || || || ||||| || |||| | Sbjct 6098 TTCTTGACTGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACGCCAACTTGATGAAGCAA 6157 Query 23038 TACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAAC 23097 ||||| |||| || || ||||| || ||| | || ||| ||| |||| | || || Sbjct 6158 TACATTGAGTTCGTCGCTGATCGGCTCCTCCTCTCTCTCGGTAATGAAAAGGTTTACAAG 6217 Query 23098 GTTGCCAATCCATTTGATTTCATGGATAACAT 23129 |||||||| ||||| || |||||||| ||||| Sbjct 6218 GTTGCCAACCCATTCGACTTCATGGAGAACAT 6249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356191273770847