Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1315 190 3e-43 seq2965 141 1e-28 seq5294 113 6e-20 >seq1315 Length=11532 Score = 190 bits (210), Expect = 3e-43 Identities = 742/1149 (65%), Gaps = 32/1149 (3%) Strand=Plus/Plus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATTTCAGTGCA 79679 ||||||| || ||||| || ||||||| || | | || |||| | || ||||| || Sbjct 325 GATGCCAAGTTGCAAACAGCAACCTCATCAGG-TGCACAGTATTCGACAATCTCAGTACA 383 Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739 | ||| | | ||||| || | ||| | ||| || |||||| ||| || ||||| Sbjct 384 CAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATC 443 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799 ||| ||||| ||||| || | || || ||| | |||| || | || | | ||| | Sbjct 444 CTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGTACCAAAG 503 Query 79800 GACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTT-----TCGTATTGTGTATAT 79854 | | ||||| || ||| || | || | | ||||||| ||| Sbjct 504 CTTTTGGGCCTTGATG-----CTTTTACGACCCTTGCCCTCAGACTCGTATTTCTCATAC 558 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 || ||||||||||| || | || ||| | || |||||||| |||| ||| |||||| Sbjct 559 AAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGGGCACATC 618 Query 79915 AACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 79972 || | ||| || | || ||| || || ||||| |||||||| |||||||| |||| Sbjct 619 AATGTCCA--GTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAG 676 Query 79973 CTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 80032 | || ||||| | || | | |||||| ||||| |||||| || ||||||| Sbjct 677 CGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGA 736 Query 80033 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGT 80092 || | | || ||||| ||||| || || | ||| ||||| | | | || || || |||| Sbjct 737 ACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACGCTTGT 796 Query 80093 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 80152 | || || ||||| | |||| |||||||| || |||||| | ||| |||| || | Sbjct 797 TACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATTC 856 Query 80153 CATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA--AT 80210 | ||||| | || || || || | || || || | ||||| || | | || Sbjct 857 CGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCACGGATTCTGTGAACAT 916 Query 80211 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 80270 || ||||| || || || || | || || || | || || || || || ||||| Sbjct 917 TG--AGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGTGTCATA 974 Query 80271 GATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 80330 ||| || || ||||| || || |||||| | || || || || | ||| | Sbjct 975 GATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGTGCTTG 1034 Query 80331 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAG 80390 || || ||| || | || || || ||||| || || |||| |||| | Sbjct 1035 TGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGACATCAA 1094 Query 80391 ATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCA 80449 ||||| ||||| || || | || |||||| || | || ||||| || |||||||||| Sbjct 1095 GTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCG-TGGATTCCGACAGCGACACGCA 1153 Query 80450 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTT 80509 | | ||| || || || | ||| ||||||| || | | | || ||| | Sbjct 1154 TAATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGACGGAGGAGATATGATCGCT 1213 Query 80510 CCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGA 80567 | | || || ||||| || || | ||| ||||| || || ||||| | ||| | || Sbjct 1214 CAAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCGCGGTCGTAGACGATAGCGGA 1271 Query 80568 GTTGAGTTTATCCTTATATTTGTTAACTACATC-CATGGTGATACTTG-AAATAATCGGA 80625 |||||| | ||| | || |||| || ||| | | |||| || || || Sbjct 1272 GTTGAGCTCGGCCTCGTGCTTCATAACGCAGTCGTATGTT--TGCTTGCTGATCATGGGT 1329 Query 80626 GAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AA 80684 || | || ||| ||| || ||||||| | |||| || || || | | | || Sbjct 1330 GACAATCTCTTGTTTCGAGGGTTGACATAGTGGTATAATTCGGAAATGAC-GCTCGAGAA 1388 Query 80685 TAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATA 80744 | | || || |||| |||||| || || || || || ||||| || || | |||||||| Sbjct 1389 TTGCTTCTTGGTTTGCTTGTGGAGGTTCGAAACAGCAATTCTTGCTGCGAGGATGGCATA 1448 Query 80745 ATCTGGATG 80753 ||| || || Sbjct 1449 ATCGGGGTG 1457 >seq2965 Length=6591 Score = 141 bits (156), Expect = 1e-28 Identities = 341/513 (66%), Gaps = 5/513 (1%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 |||||||| ||| | ||||| || ||||| || || || ||||| | | || || || Sbjct 6303 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 6244 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAA-AT 49787 |||||||| || || || |||| ||| || |||| |||| | | || | ||| | Sbjct 6243 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTTTCAT-TACCGAGAGAGAGGAG 6185 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 | | ||| ||||| || || || ||| ||||||| | ||||| || | ||| Sbjct 6184 GAGCCGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAG 6125 Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 | ||||||||| |||| | || ||||| ||||| || || || || || | Sbjct 6124 AGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGAC 6065 Query 49908 AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 49967 | | || | | | | ||| || ||||| || || || | | |||||||| Sbjct 6064 GGCTTGGACTGCTGCCTTACTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCGAA 6005 Query 49968 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 50027 ||| ||| ||||||||||| | || | |||||||| || || || || | ||| Sbjct 6004 GTCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCAT 5945 Query 50028 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTC 50087 ||||||||||| || | ||| || ||||| || || || ||| |||||||| || || Sbjct 5944 GAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTC 5885 Query 50088 TACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCACTT 50144 || || ||||||||||| || | | || | | | | |||| || ||||| Sbjct 5884 AACGGCAGCAAAGGCAACGAGACGTTGAGCAAAGGTAGACTCCTTGTCTTGGATCCATCG 5825 Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 50177 |||||||||||||||||| || | ||||| Sbjct 5824 GACAGCCCAATCGGCCTTCTTCTTGATGCAAGG 5792 >seq5294 Length=3402 Score = 113 bits (124), Expect = 6e-20 Identities = 316/482 (66%), Gaps = 5/482 (1%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||| || || || || || || | | ||||| |||||||||||||| || || ||| Sbjct 641 GTGAACTGGATAGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTGAGA 582 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTA-GTTTGGAATAACTCGGATCTGCTAT 78836 || | |||| || |||||||||||| || | || || | || || | || Sbjct 581 CCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTACCCATGGTTGGGTCCTTC-AT 523 Query 78837 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 78896 ||||| ||||| |||||| ||| || || || || || | ||| |||||||| | | Sbjct 522 GTGGATGTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAAC 463 Query 78897 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 78956 || || ||||| |||||||||| ||| || || | ||| ||||| |||| | Sbjct 462 AATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGAT 403 Query 78957 GTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATT 79013 ||||| ||| || || ||||||||||| || || || | ||||| || | || Sbjct 402 GTTTGGAACATTTTGGATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTATCGGA 343 Query 79014 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 79073 ||| | | | || | | | | || || || || || ||||| || ||||| Sbjct 342 CCAGAGTCCCATATCAACAAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCC 283 Query 79074 AGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCC 79133 || | || | ||||| ||| || || ||| ||||| || | | || || ||| Sbjct 282 AGCAAGAACACGCCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGAATCC 223 Query 79134 CAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193 | || ||| ||| || ||||||||||| || || | ||||| || | | ||| Sbjct 222 AAGGATCTGACTAGTACTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACC 163 Query 79194 GT 79195 || Sbjct 162 GT 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718181269968360