Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 190 3e-43
seq2965 141 1e-28
seq5294 113 6e-20
>seq1315
Length=11532
Score = 190 bits (210), Expect = 3e-43
Identities = 742/1149 (65%), Gaps = 32/1149 (3%)
Strand=Plus/Plus
Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATTTCAGTGCA 79679
||||||| || ||||| || ||||||| || | | || |||| | || ||||| ||
Sbjct 325 GATGCCAAGTTGCAAACAGCAACCTCATCAGG-TGCACAGTATTCGACAATCTCAGTACA 383
Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739
| ||| | | ||||| || | ||| | ||| || |||||| ||| || |||||
Sbjct 384 CAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATC 443
Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799
||| ||||| ||||| || | || || ||| | |||| || | || | | ||| |
Sbjct 444 CTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGTACCAAAG 503
Query 79800 GACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTT-----TCGTATTGTGTATAT 79854
| | ||||| || ||| || | || | | ||||||| |||
Sbjct 504 CTTTTGGGCCTTGATG-----CTTTTACGACCCTTGCCCTCAGACTCGTATTTCTCATAC 558
Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914
|| ||||||||||| || | || ||| | || |||||||| |||| ||| ||||||
Sbjct 559 AAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGGGCACATC 618
Query 79915 AACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 79972
|| | ||| || | || ||| || || ||||| |||||||| |||||||| ||||
Sbjct 619 AATGTCCA--GTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAG 676
Query 79973 CTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 80032
| || ||||| | || | | |||||| ||||| |||||| || |||||||
Sbjct 677 CGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGA 736
Query 80033 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGT 80092
|| | | || ||||| ||||| || || | ||| ||||| | | | || || || ||||
Sbjct 737 ACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACGCTTGT 796
Query 80093 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 80152
| || || ||||| | |||| |||||||| || |||||| | ||| |||| || |
Sbjct 797 TACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATTC 856
Query 80153 CATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA--AT 80210
| ||||| | || || || || | || || || | ||||| || | | ||
Sbjct 857 CGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCACGGATTCTGTGAACAT 916
Query 80211 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 80270
|| ||||| || || || || | || || || | || || || || || |||||
Sbjct 917 TG--AGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGTGTCATA 974
Query 80271 GATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 80330
||| || || ||||| || || |||||| | || || || || | ||| |
Sbjct 975 GATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGTGCTTG 1034
Query 80331 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAG 80390
|| || ||| || | || || || ||||| || || |||| |||| |
Sbjct 1035 TGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGACATCAA 1094
Query 80391 ATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCA 80449
||||| ||||| || || | || |||||| || | || ||||| || ||||||||||
Sbjct 1095 GTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCG-TGGATTCCGACAGCGACACGCA 1153
Query 80450 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTT 80509
| | ||| || || || | ||| ||||||| || | | | || ||| |
Sbjct 1154 TAATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGACGGAGGAGATATGATCGCT 1213
Query 80510 CCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGA 80567
| | || || ||||| || || | ||| ||||| || || ||||| | ||| | ||
Sbjct 1214 CAAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCGCGGTCGTAGACGATAGCGGA 1271
Query 80568 GTTGAGTTTATCCTTATATTTGTTAACTACATC-CATGGTGATACTTG-AAATAATCGGA 80625
|||||| | ||| | || |||| || ||| | | |||| || || ||
Sbjct 1272 GTTGAGCTCGGCCTCGTGCTTCATAACGCAGTCGTATGTT--TGCTTGCTGATCATGGGT 1329
Query 80626 GAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA-AA 80684
|| | || ||| ||| || ||||||| | |||| || || || | | | ||
Sbjct 1330 GACAATCTCTTGTTTCGAGGGTTGACATAGTGGTATAATTCGGAAATGAC-GCTCGAGAA 1388
Query 80685 TAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATA 80744
| | || || |||| |||||| || || || || || ||||| || || | ||||||||
Sbjct 1389 TTGCTTCTTGGTTTGCTTGTGGAGGTTCGAAACAGCAATTCTTGCTGCGAGGATGGCATA 1448
Query 80745 ATCTGGATG 80753
||| || ||
Sbjct 1449 ATCGGGGTG 1457
>seq2965
Length=6591
Score = 141 bits (156), Expect = 1e-28
Identities = 341/513 (66%), Gaps = 5/513 (1%)
Strand=Plus/Minus
Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728
|||||||| ||| | ||||| || ||||| || || || ||||| | | || || ||
Sbjct 6303 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 6244
Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAA-AT 49787
|||||||| || || || |||| ||| || |||| |||| | | || | ||| |
Sbjct 6243 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTTTCAT-TACCGAGAGAGAGGAG 6185
Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847
| | ||| ||||| || || || ||| ||||||| | ||||| || | |||
Sbjct 6184 GAGCCGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAG 6125
Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907
| ||||||||| |||| | || ||||| ||||| || || || || || |
Sbjct 6124 AGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGAC 6065
Query 49908 AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 49967
| | || | | | | ||| || ||||| || || || | | ||||||||
Sbjct 6064 GGCTTGGACTGCTGCCTTACTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCGAA 6005
Query 49968 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 50027
||| ||| ||||||||||| | || | |||||||| || || || || | |||
Sbjct 6004 GTCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCAT 5945
Query 50028 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTC 50087
||||||||||| || | ||| || ||||| || || || ||| |||||||| || ||
Sbjct 5944 GAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTC 5885
Query 50088 TACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCACTT 50144
|| || ||||||||||| || | | || | | | | |||| || |||||
Sbjct 5884 AACGGCAGCAAAGGCAACGAGACGTTGAGCAAAGGTAGACTCCTTGTCTTGGATCCATCG 5825
Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 50177
|||||||||||||||||| || | |||||
Sbjct 5824 GACAGCCCAATCGGCCTTCTTCTTGATGCAAGG 5792
>seq5294
Length=3402
Score = 113 bits (124), Expect = 6e-20
Identities = 316/482 (66%), Gaps = 5/482 (1%)
Strand=Plus/Minus
Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777
||||| || || || || || || | | ||||| |||||||||||||| || || |||
Sbjct 641 GTGAACTGGATAGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTGAGA 582
Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTA-GTTTGGAATAACTCGGATCTGCTAT 78836
|| | |||| || |||||||||||| || | || || | || || | ||
Sbjct 581 CCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTACCCATGGTTGGGTCCTTC-AT 523
Query 78837 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 78896
||||| ||||| |||||| ||| || || || || || | ||| |||||||| | |
Sbjct 522 GTGGATGTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAAC 463
Query 78897 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 78956
|| || ||||| |||||||||| ||| || || | ||| ||||| |||| |
Sbjct 462 AATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGAT 403
Query 78957 GTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATT 79013
||||| ||| || || ||||||||||| || || || | ||||| || | ||
Sbjct 402 GTTTGGAACATTTTGGATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTATCGGA 343
Query 79014 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 79073
||| | | | || | | | | || || || || || ||||| || |||||
Sbjct 342 CCAGAGTCCCATATCAACAAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCC 283
Query 79074 AGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCC 79133
|| | || | ||||| ||| || || ||| ||||| || | | || || |||
Sbjct 282 AGCAAGAACACGCCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGAATCC 223
Query 79134 CAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193
| || ||| ||| || ||||||||||| || || | ||||| || | | |||
Sbjct 222 AAGGATCTGACTAGTACTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACC 163
Query 79194 GT 79195
||
Sbjct 162 GT 161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718181269968360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |