Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1973 131 1e-25 >seq1973 Length=9094 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | ||||||||| | ||||||||||||||| | ||||| ||| Sbjct 6362 CCTCCACGAAGGCGAAGCACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTCGCTG 6303 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || |||||||| |||||||| |||||||||||||||||||| | || Sbjct 6302 AGGGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGGA 6243 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || |||| ||||| | ||| |||||| || ||| || Sbjct 6242 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACT 6183 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || ||||| ||||| || || || || ||||| Sbjct 6182 TCCAATGTAATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 6136 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | || |||||| || | |||||| ||||| Sbjct 6134 CCACCACGGAGACGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAG 6075 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || |||| || | ||| |||||||| ||||| | |||||||||||| | || Sbjct 6074 AGTGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGTCGCTGTTGATCCGGTGGA 6015 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || |||| ||||| | ||| |||||| || ||||| Sbjct 6014 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCTGAAGATTCGACC 5955 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| ||||| || || || |||||||| Sbjct 5954 TCGAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 5908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381324287213442