Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1315 183 4e-41 seq2965 132 6e-26 seq5294 98.7 1e-15 >seq1315 Length=11532 Score = 183 bits (202), Expect = 4e-41 Identities = 742/1154 (64%), Gaps = 30/1154 (3%) Strand=Plus/Plus Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCA 71757 |||| ||||||| || ||||| || ||||||| || | |||| | ||| ||| Sbjct 319 GCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGACAATCTCA 378 Query 71758 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 71817 || || | || | | |||||| || | ||| | ||| || |||||| ||| || Sbjct 379 GTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAA 438 Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877 |||||||| ||||| || || || | || || ||| | |||| || | || | | | Sbjct 439 GCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGTAC 498 Query 71878 CAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTT-----TCGTATTGTG 71932 || | | | ||||| || ||| || | || | | ||||||| Sbjct 499 CAAAGCTTTTGGGCCTTGATG-----CTTTTACGACCCTTGCCCTCAGACTCGTATTTCT 553 Query 71933 TATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGAC 71992 ||| || ||||||||||| || | | | | | || |||||||| || || || | Sbjct 554 CATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGGGC 613 Query 71993 ACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCA 72050 ||||||||| ||| || | || ||| || || ||||| |||||||| |||||||| Sbjct 614 ACATCAATGTCCA--GTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCA 671 Query 72051 AAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATC 72110 ||||| || ||||| | || | | |||||| ||||| |||||| || || Sbjct 672 GAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTC 731 Query 72111 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCG 72170 ||||||| | | || ||||| ||||| || || | ||| ||||| | | | || || || Sbjct 732 GAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACG 791 Query 72171 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 72230 ||||| || || ||||| | |||| |||||||| || |||||| | ||| |||| Sbjct 792 CTTGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGGAAC 851 Query 72231 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCT 72290 || || ||||| || || || || | || || || | ||||| || || Sbjct 852 GATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCACGGATTCTGTG 911 Query 72291 A--ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 72348 | |||| ||||| || || || || | || || || | || || || || || Sbjct 912 AACATTG--AGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGTG 969 Query 72349 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 72408 |||||||| || || || || || ||| |||||| | || || || || | ||| Sbjct 970 TCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGT 1029 Query 72409 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 72468 | || || ||| || | || || || ||||| || || |||| ||| Sbjct 1030 GCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGAC 1089 Query 72469 AGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGAC 72527 | | ||||| ||||| || || | || |||||| || | || ||||| || ||||| Sbjct 1090 ATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCG-TGGATTCCGACAGCGAC 1148 Query 72528 ACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGA 72587 |||||| | |||||| || || | ||| ||||||| || | | | || || Sbjct 1149 ACGCATAATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGACGGAGGAGATATGA 1208 Query 72588 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATA 72645 | || | || || ||||| || || | ||| ||||| || || ||||| | ||| Sbjct 1209 TCGCTCAAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCGCGGTCGTAGACGATA 1266 Query 72646 ACCGAATTGAGTTTATCCTTATATTTGTTAACTATATC-CATGGTGATACTTG-AAATAA 72703 | || ||||| | ||| | || |||| || ||| | | |||| || | Sbjct 1267 GCGGAGTTGAGCTCGGCCTCGTGCTTCATAACGCAGTCGTATGTT--TGCTTGCTGATCA 1324 Query 72704 TCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCAC 72763 | || || | || ||| ||| || ||||||| | |||| || || || | | Sbjct 1325 TGGGTGACAATCTCTTGTTTCGAGGGTTGACATAGTGGTATAATTCGGAAATGAC-GCTC 1383 Query 72764 TA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 72822 | ||| | || || |||| |||||| || || || || || ||||| || || || ||| Sbjct 1384 GAGAATTGCTTCTTGGTTTGCTTGTGGAGGTTCGAAACAGCAATTCTTGCTGCGAGGATG 1443 Query 72823 GCATAATCTGGATG 72836 |||||||| || || Sbjct 1444 GCATAATCGGGGTG 1457 >seq2965 Length=6591 Score = 132 bits (146), Expect = 6e-26 Identities = 293/437 (67%), Gaps = 2/437 (0%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 |||||||| ||| | ||||| || ||||| || || |||||||| | | || || || Sbjct 6303 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 6244 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAA-AT 41892 |||||||| || || || |||| ||| || |||| |||| | | || | ||| | Sbjct 6243 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTTTCAT-TACCGAGAGAGAGGAG 6185 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 | | ||| |||| ||| || || ||| ||||||| | ||||| || | ||| Sbjct 6184 GAGCCGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAG 6125 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 | ||||||||| |||| | || ||||| ||||| || || || || || | Sbjct 6124 AGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGAC 6065 Query 42013 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 42072 | | |||| | | | ||| || ||| | || || || | | |||||||| Sbjct 6064 GGCTTGGACTGCTGCCTTACTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCGAA 6005 Query 42073 ATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 42132 ||| ||| |||||||| || | || || |||||||| || || || || | ||| Sbjct 6004 GTCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCAT 5945 Query 42133 TAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTC 42192 ||||||||||| || | ||| || || || || || || ||| |||||||| || || Sbjct 5944 GAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTC 5885 Query 42193 TACTGCCGCAAAGGCAA 42209 || || |||||||||| Sbjct 5884 AACGGCAGCAAAGGCAA 5868 >seq5294 Length=3402 Score = 98.7 bits (108), Expect = 1e-15 Identities = 189/278 (68%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || ||||| || || | || || || | ||||| ||||||||||| || || || ||| Sbjct 641 GTGAACTGGATAGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTGAGA 582 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 || | |||| || ||||||||||| || | || | | || || ||| Sbjct 581 CCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTACCCATGGTTGGGTCCTTCATG 522 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 || || ||||| || ||| ||| || || || || || | ||| |||||||| | | Sbjct 521 TGGATGTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAACA 462 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040 || || ||||| |||||||||| ||| || || | ||| ||||| |||| | | Sbjct 461 ATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGATG 402 Query 71041 TTTG---TATTCTGAATGGATCCACCATCTGCAATAAT 71075 |||| ||| || || ||||||||||| ||||| || Sbjct 401 TTTGGAACATTTTGGATCGATCCACCATCGGCAATGAT 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671057413299240