Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 183 4e-41
seq2965 132 6e-26
seq5294 98.7 1e-15
>seq1315
Length=11532
Score = 183 bits (202), Expect = 4e-41
Identities = 742/1154 (64%), Gaps = 30/1154 (3%)
Strand=Plus/Plus
Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCA 71757
|||| ||||||| || ||||| || ||||||| || | |||| | ||| |||
Sbjct 319 GCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGACAATCTCA 378
Query 71758 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 71817
|| || | || | | |||||| || | ||| | ||| || |||||| ||| ||
Sbjct 379 GTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAA 438
Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877
|||||||| ||||| || || || | || || ||| | |||| || | || | | |
Sbjct 439 GCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGTAC 498
Query 71878 CAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTT-----TCGTATTGTG 71932
|| | | | ||||| || ||| || | || | | |||||||
Sbjct 499 CAAAGCTTTTGGGCCTTGATG-----CTTTTACGACCCTTGCCCTCAGACTCGTATTTCT 553
Query 71933 TATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGAC 71992
||| || ||||||||||| || | | | | | || |||||||| || || || |
Sbjct 554 CATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGGGC 613
Query 71993 ACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCA 72050
||||||||| ||| || | || ||| || || ||||| |||||||| ||||||||
Sbjct 614 ACATCAATGTCCA--GTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCA 671
Query 72051 AAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATC 72110
||||| || ||||| | || | | |||||| ||||| |||||| || ||
Sbjct 672 GAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTC 731
Query 72111 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCG 72170
||||||| | | || ||||| ||||| || || | ||| ||||| | | | || || ||
Sbjct 732 GAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACG 791
Query 72171 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 72230
||||| || || ||||| | |||| |||||||| || |||||| | ||| ||||
Sbjct 792 CTTGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGGAAC 851
Query 72231 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCT 72290
|| || ||||| || || || || | || || || | ||||| || ||
Sbjct 852 GATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCACGGATTCTGTG 911
Query 72291 A--ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 72348
| |||| ||||| || || || || | || || || | || || || || ||
Sbjct 912 AACATTG--AGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGTG 969
Query 72349 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 72408
|||||||| || || || || || ||| |||||| | || || || || | |||
Sbjct 970 TCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGT 1029
Query 72409 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 72468
| || || ||| || | || || || ||||| || || |||| |||
Sbjct 1030 GCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGAC 1089
Query 72469 AGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGAC 72527
| | ||||| ||||| || || | || |||||| || | || ||||| || |||||
Sbjct 1090 ATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCG-TGGATTCCGACAGCGAC 1148
Query 72528 ACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGA 72587
|||||| | |||||| || || | ||| ||||||| || | | | || ||
Sbjct 1149 ACGCATAATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGACGGAGGAGATATGA 1208
Query 72588 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATA 72645
| || | || || ||||| || || | ||| ||||| || || ||||| | |||
Sbjct 1209 TCGCTCAAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCGCGGTCGTAGACGATA 1266
Query 72646 ACCGAATTGAGTTTATCCTTATATTTGTTAACTATATC-CATGGTGATACTTG-AAATAA 72703
| || ||||| | ||| | || |||| || ||| | | |||| || |
Sbjct 1267 GCGGAGTTGAGCTCGGCCTCGTGCTTCATAACGCAGTCGTATGTT--TGCTTGCTGATCA 1324
Query 72704 TCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCAC 72763
| || || | || ||| ||| || ||||||| | |||| || || || | |
Sbjct 1325 TGGGTGACAATCTCTTGTTTCGAGGGTTGACATAGTGGTATAATTCGGAAATGAC-GCTC 1383
Query 72764 TA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 72822
| ||| | || || |||| |||||| || || || || || ||||| || || || |||
Sbjct 1384 GAGAATTGCTTCTTGGTTTGCTTGTGGAGGTTCGAAACAGCAATTCTTGCTGCGAGGATG 1443
Query 72823 GCATAATCTGGATG 72836
|||||||| || ||
Sbjct 1444 GCATAATCGGGGTG 1457
>seq2965
Length=6591
Score = 132 bits (146), Expect = 6e-26
Identities = 293/437 (67%), Gaps = 2/437 (0%)
Strand=Plus/Minus
Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833
|||||||| ||| | ||||| || ||||| || || |||||||| | | || || ||
Sbjct 6303 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 6244
Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAA-AT 41892
|||||||| || || || |||| ||| || |||| |||| | | || | ||| |
Sbjct 6243 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTTTCAT-TACCGAGAGAGAGGAG 6185
Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952
| | ||| |||| ||| || || ||| ||||||| | ||||| || | |||
Sbjct 6184 GAGCCGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAG 6125
Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012
| ||||||||| |||| | || ||||| ||||| || || || || || |
Sbjct 6124 AGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGAC 6065
Query 42013 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 42072
| | |||| | | | ||| || ||| | || || || | | ||||||||
Sbjct 6064 GGCTTGGACTGCTGCCTTACTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCGAA 6005
Query 42073 ATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 42132
||| ||| |||||||| || | || || |||||||| || || || || | |||
Sbjct 6004 GTCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCAT 5945
Query 42133 TAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTC 42192
||||||||||| || | ||| || || || || || || ||| |||||||| || ||
Sbjct 5944 GAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTC 5885
Query 42193 TACTGCCGCAAAGGCAA 42209
|| || ||||||||||
Sbjct 5884 AACGGCAGCAAAGGCAA 5868
>seq5294
Length=3402
Score = 98.7 bits (108), Expect = 1e-15
Identities = 189/278 (68%), Gaps = 3/278 (1%)
Strand=Plus/Minus
Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860
|| ||||| || || | || || || | ||||| ||||||||||| || || || |||
Sbjct 641 GTGAACTGGATAGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTGAGA 582
Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920
|| | |||| || ||||||||||| || | || | | || || |||
Sbjct 581 CCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTACCCATGGTTGGGTCCTTCATG 522
Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980
|| || ||||| || ||| ||| || || || || || | ||| |||||||| | |
Sbjct 521 TGGATGTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAACA 462
Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040
|| || ||||| |||||||||| ||| || || | ||| ||||| |||| | |
Sbjct 461 ATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGATG 402
Query 71041 TTTG---TATTCTGAATGGATCCACCATCTGCAATAAT 71075
|||| ||| || || ||||||||||| ||||| ||
Sbjct 401 TTTGGAACATTTTGGATCGATCCACCATCGGCAATGAT 364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671057413299240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |