Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 114 3e-20
seq47 111 4e-19
seq231 98.7 2e-15
seq2965 87.8 4e-12
>seq1973
Length=9094
Score = 114 bits (126), Expect = 3e-20
Identities = 129/173 (75%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || ||||| ||||| ||||| || || || | ||||| || ||||| || ||
Sbjct 5876 GTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTCCTCGAGTTGCTTGCCG 5817
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | |||||| || || || || || || || ||||||||||| | ||
Sbjct 5816 GCAAAGATAAGGCGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGAATCTTCGACTTG 5757
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
||||| || | |||||| || | ||| || || || || || ||||| |||||
Sbjct 5756 ACATTGTCGATGGTATCACTGGATTCGACTTCGAGAGTGATGGTCTTGCCAGT 5704
Score = 96.9 bits (106), Expect = 8e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| || ||||| || ||||| || || | ||| || || | ||| || || || |||
Sbjct 6326 TCCTTTTGAATGTTGTAGTCGCTGAGGGTACGACCATCCTCCAATTGCTTGCCGGCGAAA 6267
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| | | ||||||||| || || || || || |||||||| ||||||| || |||||
Sbjct 6266 ATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 6207
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | || || || || || || | |||||||||||| || || || || || ||
Sbjct 6206 TCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGCCGGTCAGAGTCTTAACG 6147
Query 104549 AATATCTGCAT 104559
|| ||||||||
Sbjct 6146 AAGATCTGCAT 6136
Score = 95.1 bits (104), Expect = 3e-14
Identities = 127/174 (73%), Gaps = 2/174 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| || || ||||||||||| | ||| || || || || |||||
Sbjct 5592 GTCGACTCCTTCTGAATGTTGTAATCAGATAGAGTACGACCATCCTCGAGCTGCTTTCCG 5533
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481
||||| || | | || || || || || ||||| || || ||||| ||| ||||| ||
Sbjct 5532 GCAAAGATCAAGCGTTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATC-TTGCTCTT 5474
Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
|| || |||| ||| || | |||||||| || || || |||||||| ||
Sbjct 5473 GACGTTGTCTATGGTGTCCGACGACTCTACCTCGAGGGTGATGGTCTTACCGGT 5420
>seq47
Length=33200
Score = 111 bits (122), Expect = 4e-19
Identities = 149/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 104332 TCCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390
||| || | ||| | |||| || ||||| | || || || ||||| || || ||||| |
Sbjct 24307 TCCTCCACGTAGACGTAAG-ACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 24249
Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450
| || || | ||||| || ||||| |||||||| || || | | ||||||||| || |
Sbjct 24248 AAAGGGTACGTCCGTCCTCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGATCCGGTG 24189
Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510
| ||||| || || ||||||||||| | || ||||| || | ||| || || || |
Sbjct 24188 GAATTCCCTCCTTGTCCTGAATCTTGGACTTAACATTATCGATGGTGTCCGAAGACTCAA 24129
Query 104511 CCTCTAGTGTAATAGTCTTACCAGT 104535
||||||| || || ||||| || ||
Sbjct 24128 CCTCTAGGGTGATGGTCTTGCCCGT 24104
>seq231
Length=23011
Score = 98.7 bits (108), Expect = 2e-15
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431
|| || ||||||||||| || | || | || || || ||||| |||||||| || ||
Sbjct 15344 TTTTGGATATTATAGTCTGACAAGGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATC 15403
Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491
| | ||||||||| || || ||||| || || ||||| ||||| | || ||||| ||
Sbjct 15404 AAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 15463
Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550
| || || || || ||||| || ||||| |||||||| || || || || || ||
Sbjct 15464 ATAGTGTCCGAAGACTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGAA 15522
>seq2965
Length=6591
Score = 87.8 bits (96), Expect = 4e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
||||| ||||| || || || ||||| ||||| || ||||| || | ||||| |||
Sbjct 5867 GTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCATCCATCTTCTGG 5926
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
|||||||| | ||||| ||| | || | || ||||| ||||| ||||| | | |||
Sbjct 5927 TTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTCCCGTGAC 5986
Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283
|| ||| | ||| ||||||||| ||
Sbjct 5987 GAGGGTCTCCACACCGACTTCGCATG 6012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151254579905292
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |