Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1973 114 3e-20 seq47 111 4e-19 seq231 98.7 2e-15 seq2965 87.8 4e-12 >seq1973 Length=9094 Score = 114 bits (126), Expect = 3e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| ||||| ||||| || || || | ||||| || ||||| || || Sbjct 5876 GTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTCCTCGAGTTGCTTGCCG 5817 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | |||||| || || || || || || || ||||||||||| | || Sbjct 5816 GCAAAGATAAGGCGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGAATCTTCGACTTG 5757 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| || | |||||| || | ||| || || || || || ||||| ||||| Sbjct 5756 ACATTGTCGATGGTATCACTGGATTCGACTTCGAGAGTGATGGTCTTGCCAGT 5704 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || ||||| || ||||| || || | ||| || || | ||| || || || ||| Sbjct 6326 TCCTTTTGAATGTTGTAGTCGCTGAGGGTACGACCATCCTCCAATTGCTTGCCGGCGAAA 6267 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | ||||||||| || || || || || |||||||| ||||||| || ||||| Sbjct 6266 ATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 6207 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || || || || | |||||||||||| || || || || || || Sbjct 6206 TCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGCCGGTCAGAGTCTTAACG 6147 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 6146 AAGATCTGCAT 6136 Score = 95.1 bits (104), Expect = 3e-14 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || || ||||||||||| | ||| || || || || ||||| Sbjct 5592 GTCGACTCCTTCTGAATGTTGTAATCAGATAGAGTACGACCATCCTCGAGCTGCTTTCCG 5533 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 ||||| || | | || || || || || ||||| || || ||||| ||| ||||| || Sbjct 5532 GCAAAGATCAAGCGTTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATC-TTGCTCTT 5474 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || |||| ||| || | |||||||| || || || |||||||| || Sbjct 5473 GACGTTGTCTATGGTGTCCGACGACTCTACCTCGAGGGTGATGGTCTTACCGGT 5420 >seq47 Length=33200 Score = 111 bits (122), Expect = 4e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 ||| || | ||| | |||| || ||||| | || || || ||||| || || ||||| | Sbjct 24307 TCCTCCACGTAGACGTAAG-ACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 24249 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | || || | ||||| || ||||| |||||||| || || | | ||||||||| || | Sbjct 24248 AAAGGGTACGTCCGTCCTCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGATCCGGTG 24189 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | ||||| || || ||||||||||| | || ||||| || | ||| || || || | Sbjct 24188 GAATTCCCTCCTTGTCCTGAATCTTGGACTTAACATTATCGATGGTGTCCGAAGACTCAA 24129 Query 104511 CCTCTAGTGTAATAGTCTTACCAGT 104535 ||||||| || || ||||| || || Sbjct 24128 CCTCTAGGGTGATGGTCTTGCCCGT 24104 >seq231 Length=23011 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || || ||||||||||| || | || | || || || ||||| |||||||| || || Sbjct 15344 TTTTGGATATTATAGTCTGACAAGGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATC 15403 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 | | ||||||||| || || ||||| || || ||||| ||||| | || ||||| || Sbjct 15404 AAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 15463 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | || || || || ||||| || ||||| |||||||| || || || || || || Sbjct 15464 ATAGTGTCCGAAGACTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGAA 15522 >seq2965 Length=6591 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || || ||||| ||||| || ||||| || | ||||| ||| Sbjct 5867 GTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCATCCATCTTCTGG 5926 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||| | ||||| ||| | || | || ||||| ||||| ||||| | | ||| Sbjct 5927 TTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTCCCGTGAC 5986 Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283 || ||| | ||| ||||||||| || Sbjct 5987 GAGGGTCTCCACACCGACTTCGCATG 6012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151254579905292