Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1973 95.1 1e-14 >seq1973 Length=9094 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| ||||| | ||||||||||||||||||||||| || || | || || | |||| Sbjct 6345 CACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTC-GCTGAGGGTACGACCATCCT 6287 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 ||| ||||| ||| || |||| || ||||| |||||| || | || ||||| ||| Sbjct 6286 CCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTATCCT 6227 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||||| | | || || || | |||||| || | ||| || || | Sbjct 6226 GGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCT 6167 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| ||||| || || || |||||||| Sbjct 6166 TGCCGGTCAGAGTCTTAACGAAGATCTGCAT 6136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421201148643749