Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq504 118 2e-22 seq3818 100 4e-17 >seq504 Length=17895 Score = 118 bits (130), Expect = 2e-22 Identities = 110/137 (80%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||||||||| |||||||||||||| || Sbjct 2135 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAAGGTATCACCAAGCCAGCCAT 2193 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | ||||| || |||||||| || ||||||||| |||| | || |||| || |||| Sbjct 2194 CAGACGTCTCGCCCGTCGTGGAGGTGTCAAGCGTATCTCAGCCATGATCTACGAGGAGAC 2253 Query 16552 TCGTGATGTTTTGAAGA 16568 |||| |||| | |||| Sbjct 2254 CCGTGGTGTTCTCAAGA 2270 >seq3818 Length=5146 Score = 100 bits (110), Expect = 4e-17 Identities = 83/99 (84%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||| |||||| || ||||||||||| ||||| ||||| || || Sbjct 3748 GCCAAGCGCCACCGCAAGAT-TCTTCGTGACAACATCCAAGGTATCACAAAGCCTGCGAT 3806 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||| || || |||||||| ||||||||| |||| Sbjct 3807 CCGTCGTCTCGCACGCCGTGGTGGTGTCAAGCGTATCTC 3845 Score = 80.6 bits (88), Expect = 4e-11 Identities = 116/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| |||| |||| | |||| ||| ||| | || |||| || | Sbjct 3902 TGATCTACGAAGAGACCCGTGGTGTTCTCAAGACCTTTCTCGAAGGTGTCATCCGAGACG 3961 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || || ||||||||||| || || |||||||| |||||| | || | ||||| | Sbjct 3962 CCGTCACATACACCGAGCACGCCAAGCGAAAGACTGTTACCTCCCTCGACGTTGTCTACG 4021 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || | |||||||| | |||| ||||| || ||||| Sbjct 4022 CCCTCAAGAGACAAGGCCGCACACTTTACGGTTTCGGTGGTTAA 4065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79066286421057