Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq504 118 2e-22
seq3818 100 4e-17
>seq504
Length=17895
Score = 118 bits (130), Expect = 2e-22
Identities = 110/137 (80%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||| |||||| || ||||||||||| |||||||||||||| ||
Sbjct 2135 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAAGGTATCACCAAGCCAGCCAT 2193
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
| | ||||| || |||||||| || ||||||||| |||| | || |||| || ||||
Sbjct 2194 CAGACGTCTCGCCCGTCGTGGAGGTGTCAAGCGTATCTCAGCCATGATCTACGAGGAGAC 2253
Query 16552 TCGTGATGTTTTGAAGA 16568
|||| |||| | ||||
Sbjct 2254 CCGTGGTGTTCTCAAGA 2270
>seq3818
Length=5146
Score = 100 bits (110), Expect = 4e-17
Identities = 83/99 (84%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || |||| ||| |||||| || ||||||||||| ||||| ||||| || ||
Sbjct 3748 GCCAAGCGCCACCGCAAGAT-TCTTCGTGACAACATCCAAGGTATCACAAAGCCTGCGAT 3806
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
||||||||| || || |||||||| ||||||||| ||||
Sbjct 3807 CCGTCGTCTCGCACGCCGTGGTGGTGTCAAGCGTATCTC 3845
Score = 80.6 bits (88), Expect = 4e-11
Identities = 116/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| ||||||| |||| |||| | |||| ||| ||| | || |||| || |
Sbjct 3902 TGATCTACGAAGAGACCCGTGGTGTTCTCAAGACCTTTCTCGAAGGTGTCATCCGAGACG 3961
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || || ||||||||||| || || |||||||| |||||| | || | ||||| |
Sbjct 3962 CCGTCACATACACCGAGCACGCCAAGCGAAAGACTGTTACCTCCCTCGACGTTGTCTACG 4021
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | || | |||||||| | |||| ||||| || |||||
Sbjct 4022 CCCTCAAGAGACAAGGCCGCACACTTTACGGTTTCGGTGGTTAA 4065
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79066286421057
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |