Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1315 199 5e-46 seq2965 145 1e-29 seq5294 113 6e-20 >seq1315 Length=11532 Score = 199 bits (220), Expect = 5e-46 Identities = 746/1152 (65%), Gaps = 26/1152 (2%) Strand=Plus/Plus Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 62950 |||| ||||||| || ||||| || ||||||| || | | || |||| | ||||| Sbjct 319 GCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGG-TGCACAGTATTCGACAATCTC 377 Query 62951 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63010 ||| || | || | | ||| || || | ||| | ||| || |||||| ||| || Sbjct 378 AGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCA 437 Query 63011 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63070 |||||||| ||||| ||||| || | || || ||| | |||| || | || | | Sbjct 438 AGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGTA 497 Query 63071 CCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTATAGTG 63126 ||| | | | ||||| || | ||| | |||| | || |||||| Sbjct 498 CCAAAGCTTTTGGGCCTTGATGCT---TTTACGAC-CCTTGCCCTCAGACTCGTATTTCT 553 Query 63127 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 63186 |||||| ||||||||||| || | || | | |||| |||||||| || | || | Sbjct 554 CATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGGGC 613 Query 63187 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63246 ||||||| | ||| || || | | || || ||||| |||||||| |||||||| | Sbjct 614 ACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGA 673 Query 63247 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63306 |||| || ||||| | || | | ||||| ||||| |||||| || |||| Sbjct 674 GAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGA 733 Query 63307 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63366 ||||| | | || ||||| ||||| || || | ||| ||||| | | | ||||| || | Sbjct 734 GGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACGCT 793 Query 63367 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63426 |||| || || ||||| | |||| |||||||| || |||||| | ||| |||| | Sbjct 794 TGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGA 853 Query 63427 TACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA- 63485 | ||||| || | || || ||||| | || || || | ||||| || | | Sbjct 854 TTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCACGGATTCTGTGAA 913 Query 63486 -ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544 |||| ||||| || || || || | || || || | || || || || ||||| Sbjct 914 CATTG--AGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGTGTC 971 Query 63545 ATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63604 ||||||||| || ||||| || || |||||| | || || || || | ||| Sbjct 972 ATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGTGC 1031 Query 63605 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63664 | || || ||| || | || || || ||||| || || |||| || | Sbjct 1032 TTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGACAT 1091 Query 63665 TAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACAC 63723 | ||||| ||||| || || | || |||||| || | || ||||| || ||||||| Sbjct 1092 CAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCG-TGGATTCCGACAGCGACAC 1150 Query 63724 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATT 63783 |||| | ||| || || || | ||| ||||||| | | | | || ||| Sbjct 1151 GCATAATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGACGGAGGAGATATGATC 1210 Query 63784 TTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAAC 63841 || | || || ||||| || || | ||| ||||| || || ||||| | ||| | Sbjct 1211 GCTCAAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCGCGGTCGTAGACGATAGC 1268 Query 63842 CGAGTTGAGTTTATCCTTATATTTGTTAACTATATC-CATGGTGATACTTG-AAATAATC 63899 |||||||| | ||| | || |||| || ||| | | |||| || || Sbjct 1269 GGAGTTGAGCTCGGCCTCGTGCTTCATAACGCAGTCGTATGTT--TGCTTGCTGATCATG 1326 Query 63900 GGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTA 63959 || || | || ||| ||| || ||||||| | |||| || || || | | | Sbjct 1327 GGTGACAATCTCTTGTTTCGAGGGTTGACATAGTGGTATAATTCGGAAATGAC-GCTCGA 1385 Query 63960 -AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGC 64018 ||| | || || |||| |||||| || || || || || ||||| || || || ||||| Sbjct 1386 GAATTGCTTCTTGGTTTGCTTGTGGAGGTTCGAAACAGCAATTCTTGCTGCGAGGATGGC 1445 Query 64019 ATAATCCGGATG 64030 |||||| || || Sbjct 1446 ATAATCGGGGTG 1457 >seq2965 Length=6591 Score = 145 bits (160), Expect = 1e-29 Identities = 296/437 (68%), Gaps = 2/437 (0%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 |||||||| ||| | ||||| || ||||| || || || ||||| | | || || || Sbjct 6303 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 6244 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAA-AT 33131 |||||||| || || || |||| ||| || |||| |||| | | || | ||| | Sbjct 6243 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTTTCAT-TACCGAGAGAGAGGAG 6185 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 | | ||| |||||||| || || ||| ||||||| | ||||| || | ||| Sbjct 6184 GAGCCGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAG 6125 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 | ||||||||| |||| | || ||||| ||||| || || || || || | Sbjct 6124 AGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGAC 6065 Query 33252 AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 33311 | | || | | | | ||| || ||||| || || || | | |||||||| Sbjct 6064 GGCTTGGACTGCTGCCTTACTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCGAA 6005 Query 33312 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 33371 ||| ||| ||||||||||| | || | |||||||| || || || || | ||| Sbjct 6004 GTCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCAT 5945 Query 33372 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTC 33431 ||||||||||| || | ||| || ||||| ||||| || ||| |||||||| || || Sbjct 5944 GAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTC 5885 Query 33432 TACTGCAGCAAAGGCAA 33448 || ||||||||||||| Sbjct 5884 AACGGCAGCAAAGGCAA 5868 >seq5294 Length=3402 Score = 113 bits (124), Expect = 6e-20 Identities = 316/482 (66%), Gaps = 5/482 (1%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||| || || || || || || | | ||||| |||||||||||||| || || ||| Sbjct 641 GTGAACTGGATAGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTGAGA 582 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAACTCGGATCTGCTAT 62113 || | |||| || ||||||||||| || | || || | || || | || Sbjct 581 CCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTACCCATGGTTGGGTCCTTC-AT 523 Query 62114 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62173 ||||| ||||| |||||| ||| || || || || || | ||| |||||||| | | Sbjct 522 GTGGATGTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAAC 463 Query 62174 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62233 || || ||||| |||||||||| ||| || || | ||| ||||| |||| | Sbjct 462 AATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGAT 403 Query 62234 GTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62290 ||||| ||| || || ||||||||||| || || || | ||||| || | ||| Sbjct 402 GTTTGGAACATTTTGGATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTATCGGA 343 Query 62291 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62350 ||| | | | || | | | | || || || || || ||||| || ||||| Sbjct 342 CCAGAGTCCCATATCAACAAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCC 283 Query 62351 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62410 || | || | ||||| ||| || || ||| || || || | |||| || ||| Sbjct 282 AGCAAGAACACGCCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGAATCC 223 Query 62411 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62470 | || ||| ||| ||||| |||||||| || || | ||||| || | | ||| Sbjct 222 AAGGATCTGACTAGTACTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACC 163 Query 62471 GT 62472 || Sbjct 162 GT 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622871286096840