Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5294 102 2e-16 seq637 87.8 5e-12 >seq5294 Length=3402 Score = 102 bits (112), Expect = 2e-16 Identities = 269/408 (66%), Gaps = 2/408 (0%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||| || || |||| |||||||| ||| ||||||||||||||| || Sbjct 187 GCTCCTATGCCAACTGCCAGTACTAGTCAGATCCTTGGATTCAACGAGTGCTTCGAGCCA 246 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || ||| | || || || || |||||| | ||||| || | || || || Sbjct 247 TACACCTCCAACATCTACTCTCGGCGTGTTCTTGCTGGAGAGTTCCAAGTTGTCAACCCA 306 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 | || ||||||||||| || || || ||| || | |||||||||| |||| Sbjct 307 TGGCTTCTCAAGGATCTTGTTGATATGGGACTCTGGTCCGATAACATGAAGAACCGTATC 366 Query 364930 ATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATT 364989 || |||| | ||| || | || || ||||| | |||| ||| | ||| || | Sbjct 367 ATTGCCGATGGTGGATCGATCCAAAATGTTCCAAACATCCCAGCTGATATCAAGGCTCTC 426 Query 364990 TACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGT 365049 ||||| || || |||||||| || || || | || | ||||| || || || ||| Sbjct 427 TACAAGACTGTTTGGGAAATCTCACAACGTACCATTGTTCAGATGGCTGCTGACCGTGGT 486 Query 365050 GCTTTTATCTGTCAGAGC-CAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAA 365108 || ||||| || | | | || || | ||| | ||||| | |||||| | || Sbjct 487 GCATTTAT-TGACCAATCTCAATCAATGAACATCCACATGAAGGACCCAACCATGGGTAA 545 Query 365109 GCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | |||| ||||||||| || ||||| | ||||| ||||| || Sbjct 546 GATTACCAGTATGCATTTCGCAGGCTGGAAGTTGGGTCTCAAGACTGG 593 >seq637 Length=16155 Score = 87.8 bits (96), Expect = 5e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 65881 GTTCCGTCATAATTGCACATATTATCTTCACTTGCCTTTACAAGACAACGCTGGATGTAA 65940 ||||| ||||| ||| || ||||||| ||| || ||||||| ||| || || ||| Sbjct 4775 GTTCCATCATATTTGGCAATGACATCTTCAAGTGCTTTGACAAGACGACGTTGAATATAA 4716 Query 65941 CCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCCGGACATTGCAGAA 66000 ||| | | ||||| ||||| || || || | |||||||||||| || | ||| || Sbjct 4715 CCAGTTTCGGCAGTCTTTACTGCAGTGTCGATGAGACCTTCACGACCAGCCATGGCGTGG 4656 Query 66001 AAGAAAAACTCAGTCGGT 66018 ||||||||||| || ||| Sbjct 4655 AAGAAAAACTCGGTTGGT 4638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303190799323718