Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq5294 102 2e-16
seq637 87.8 5e-12
>seq5294
Length=3402
Score = 102 bits (112), Expect = 2e-16
Identities = 269/408 (66%), Gaps = 2/408 (0%)
Strand=Plus/Plus
Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809
|| || ||||| || || |||| |||||||| ||| ||||||||||||||| ||
Sbjct 187 GCTCCTATGCCAACTGCCAGTACTAGTCAGATCCTTGGATTCAACGAGTGCTTCGAGCCA 246
Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869
| || ||| | || || || || |||||| | ||||| || | || || ||
Sbjct 247 TACACCTCCAACATCTACTCTCGGCGTGTTCTTGCTGGAGAGTTCCAAGTTGTCAACCCA 306
Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929
| || ||||||||||| || || || ||| || | |||||||||| ||||
Sbjct 307 TGGCTTCTCAAGGATCTTGTTGATATGGGACTCTGGTCCGATAACATGAAGAACCGTATC 366
Query 364930 ATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATT 364989
|| |||| | ||| || | || || ||||| | |||| ||| | ||| || |
Sbjct 367 ATTGCCGATGGTGGATCGATCCAAAATGTTCCAAACATCCCAGCTGATATCAAGGCTCTC 426
Query 364990 TACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGT 365049
||||| || || |||||||| || || || | || | ||||| || || || |||
Sbjct 427 TACAAGACTGTTTGGGAAATCTCACAACGTACCATTGTTCAGATGGCTGCTGACCGTGGT 486
Query 365050 GCTTTTATCTGTCAGAGC-CAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAA 365108
|| ||||| || | | | || || | ||| | ||||| | |||||| | ||
Sbjct 487 GCATTTAT-TGACCAATCTCAATCAATGAACATCCACATGAAGGACCCAACCATGGGTAA 545
Query 365109 GCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
| |||| ||||||||| || ||||| | ||||| ||||| ||
Sbjct 546 GATTACCAGTATGCATTTCGCAGGCTGGAAGTTGGGTCTCAAGACTGG 593
>seq637
Length=16155
Score = 87.8 bits (96), Expect = 5e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 65881 GTTCCGTCATAATTGCACATATTATCTTCACTTGCCTTTACAAGACAACGCTGGATGTAA 65940
||||| ||||| ||| || ||||||| ||| || ||||||| ||| || || |||
Sbjct 4775 GTTCCATCATATTTGGCAATGACATCTTCAAGTGCTTTGACAAGACGACGTTGAATATAA 4716
Query 65941 CCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCCGGACATTGCAGAA 66000
||| | | ||||| ||||| || || || | |||||||||||| || | ||| ||
Sbjct 4715 CCAGTTTCGGCAGTCTTTACTGCAGTGTCGATGAGACCTTCACGACCAGCCATGGCGTGG 4656
Query 66001 AAGAAAAACTCAGTCGGT 66018
||||||||||| || |||
Sbjct 4655 AAGAAAAACTCGGTTGGT 4638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303190799323718
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |