Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 86.0 5e-12
>seq1973
Length=9094
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 24003 GTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAG 24062
|| || || || ||||| || | || || |||||||||| ||| || ||||||||
Sbjct 5692 GTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTCGAATCCAGTGATACCATCGAC 5751
Query 24063 CAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATT 24122
| ||||| |||||| ||||| || ||||| || || || |||||| | || ||
Sbjct 5752 AATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCACCGGACCAACAGCGCCTTATC 5811
Query 24123 TACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAA 24182
| | ||||||||||||||| || | | | | || ||| || || || || || ||
Sbjct 5812 TTTGCCGGCAAGCAACTCGAGGACGGCCGCACACTCTCCGACTACAATATCCAGAAGGAG 5871
Query 24183 TCTACAATTCATTTAGT 24199
||||| |||| || ||
Sbjct 5872 TCTACCCTTCACTTGGT 5888
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || | || || || | ||||| | ||||| ||| |
Sbjct 6136 ATGCAGATCTTCGTTAAGACTCTGACCGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 6195
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || || | ||||| |||||| || || || || || || || ||||||
Sbjct 6196 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCGGATCAA 6255
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| || |||||| || |||||||||| | || |||| | | | ||||||| || |||
Sbjct 6256 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCGTACCCTCAGCGACTACAAC 6315
Query 24171 ATTCAAAAAGA 24181
|||||||| ||
Sbjct 6316 ATTCAAAAGGA 6326
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429884916751095
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |