Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 100 3e-16
seq47 84.2 2e-11
>seq1973
Length=9094
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079
|| ||||| ||||| | || |||||||||||||||||| ||||| | ||| ||
Sbjct 6350 CGAAGCACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTCGCTGAGGGTACGACCA 6291
Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139
||||| | |||||||| ||| | || || ||||| || ||||| || || || || ||
Sbjct 6290 TCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTA 6231
Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199
|| ||| || ||||| | || | || || | ||||| | || | ||||
Sbjct 6230 TCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATA 6171
Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| || ||||| ||||| || ||||| ||||||||
Sbjct 6170 GTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 6136
Score = 91.5 bits (100), Expect = 1e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097
||||||||||| |||||||||||||| | || || ||||| |||||||| ||
Sbjct 5592 GTCGACTCCTTCTGAATGTTGTAATCAGATAGAGTACGACCATCCTCGAGCTGCTTTCCG 5533
Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157
|| |||| || || |||||||| || |||||||| || ||||| ||| || ||||
Sbjct 5532 GCAAAGATCAAGCGTTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTG 5473
Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210
| | || | || || | ||||| | |||| ||| | ||| ||||||||
Sbjct 5472 ACGTTGTCTATGGTGTCCGACGACTCTACCTCGAGGGTGATGGTCTTACCGGT 5420
>seq47
Length=33200
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || || | ||| | || | ||| | |||||||||||| || |||||||| ||
Sbjct 24306 CCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 24247
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || |||||| || ||||| || ||| |||| |||||||| || ||||| ||
Sbjct 24246 AGGGTACGTCCGTCCTCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGATCCGGTGGA 24187
Query 131128 ATTCCTTCTTTGTC 131141
||||| || |||||
Sbjct 24186 ATTCCCTCCTTGTC 24173
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471955279340160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |