Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1315 178 2e-39 seq2965 136 5e-27 seq5294 116 5e-21 >seq1315 Length=11532 Score = 178 bits (196), Expect = 2e-39 Identities = 570/874 (65%), Gaps = 14/874 (2%) Strand=Plus/Plus Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 62805 |||| ||||||| || ||||| || ||||||| || | | || |||| | ||||| Sbjct 319 GCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGG-TGCACAGTATTCGACAATCTC 377 Query 62806 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 62865 ||| || | || | | |||||| || | ||| | ||| || |||||| ||| || Sbjct 378 AGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCA 437 Query 62866 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 62925 |||||||| ||||| ||||| || | || || ||| | |||| || | || | | Sbjct 438 AGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGTA 497 Query 62926 CCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTC-TCTT--TCGTATAGTGT 62982 ||| | | | ||||| || | ||| | ||| | || |||||| Sbjct 498 CCAAAGCTTTTGGGCCTTGATGCT---TTTACGACCCTTGCCCTCAGACTCGTATTTCTC 554 Query 62983 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACA 63042 |||||| ||||||||||| || | || | | ||| |||||||| || | || || Sbjct 555 ATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGGGCA 614 Query 63043 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63102 |||||| | ||| || || | | || || ||||| |||||||| |||||||| || Sbjct 615 CATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAG 674 Query 63103 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162 ||| || ||||| | || | | ||||| ||||| |||||| || ||||| Sbjct 675 AGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAG 734 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63222 |||| | | || ||||| ||||| || || | ||| ||||| | | | ||||| || || Sbjct 735 GAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACGCTT 794 Query 63223 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63282 ||| || || ||||| | |||| |||||||| || |||||| | ||| |||| || Sbjct 795 GTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGAT 854 Query 63283 ACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTA-- 63340 || ||||| | || || || || | || || || | ||||| || | | Sbjct 855 TCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCACGGATTCTGTGAAC 914 Query 63341 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 63400 |||| ||||| || || || || | || || || | || || || || || ||| Sbjct 915 ATTG--AGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGTGTCA 972 Query 63401 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63460 ||||| || || || || || ||| |||||| | || || || || | ||| Sbjct 973 TAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAGTTGTGCT 1032 Query 63461 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGT 63520 | || || ||| || | || || || ||||| || || |||| || | Sbjct 1033 TGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGACATC 1092 Query 63521 AGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACG 63579 | ||||| ||||| || || | || |||||| || | || ||||| || |||||||| Sbjct 1093 AAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCG-TGGATTCCGACAGCGACACG 1151 Query 63580 CATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63613 ||| | ||| || || || | ||| ||||||| Sbjct 1152 CATAATCATATGTTGTGGACGTTCGCAGATCTTG 1185 >seq2965 Length=6591 Score = 136 bits (150), Expect = 5e-27 Identities = 294/437 (67%), Gaps = 2/437 (0%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 |||||||| ||| | ||||| || ||||| || || || || || | | || || || Sbjct 6303 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 6244 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAA-AT 32488 |||||||| |||||||| |||| ||| || |||| |||| | | || | ||| | Sbjct 6243 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTTTCAT-TACCGAGAGAGAGGAG 6185 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 | | ||| ||||| || || || ||| ||||||| | ||||| || | ||| Sbjct 6184 GAGCCGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAG 6125 Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 | ||||||||| |||| | || ||||| ||||| || || || || || | Sbjct 6124 AGCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGAC 6065 Query 32609 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 32668 | | |||| | | | ||| || ||| | || || || | | |||||||| Sbjct 6064 GGCTTGGACTGCTGCCTTACTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCGAA 6005 Query 32669 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 32728 ||| ||| ||||||||||| | || || |||||||| || || || || | ||| Sbjct 6004 GTCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCAT 5945 Query 32729 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 32788 ||||||||||| || | ||| || ||||| || || || ||| ||||| || || || Sbjct 5944 GAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTC 5885 Query 32789 TACTGCCGCAAAGGCAA 32805 || || |||||||||| Sbjct 5884 AACGGCAGCAAAGGCAA 5868 >seq5294 Length=3402 Score = 116 bits (128), Expect = 5e-21 Identities = 317/482 (66%), Gaps = 5/482 (1%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||| || || || || || || | | ||||| |||||||||||||| || || ||| Sbjct 641 GTGAACTGGATAGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTGAGA 582 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTA-GTTTGGAATAACTCGGATCTGCTAT 61968 || | |||| || ||||||||||| || | || || | || || | || Sbjct 581 CCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTACCCATGGTTGGGTCCTTC-AT 523 Query 61969 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62028 ||||| ||||| |||||| ||| || || || || || | ||| |||||||| | | Sbjct 522 GTGGATGTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAAC 463 Query 62029 AATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62088 ||| || ||||| |||||||||| ||| || || | ||| ||||| |||| | Sbjct 462 AATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGAT 403 Query 62089 GTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145 ||||| ||| || || ||||||||||| || || || | ||||| || | ||| Sbjct 402 GTTTGGAACATTTTGGATCGATCCACCATCGGCAATGATACGGTTCTTCATGTTATCGGA 343 Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205 ||| | | | || | | | | || || || || || ||||| || ||||| Sbjct 342 CCAGAGTCCCATATCAACAAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCC 283 Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 62265 || | || | ||||| ||| || || ||| || || || | |||| || ||| Sbjct 282 AGCAAGAACACGCCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGAATCC 223 Query 62266 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325 | || ||| ||| ||||| |||||||| || || | ||||| || | | ||| Sbjct 222 AAGGATCTGACTAGTACTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCGGATACC 163 Query 62326 GT 62327 || Sbjct 162 GT 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633554784020400