Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 96.9 3e-15
>seq1973
Length=9094
Score = 96.9 bits (106), Expect = 3e-15
Identities = 146/203 (72%), Gaps = 6/203 (3%)
Strand=Plus/Plus
Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070
|| ||||| ||||| || || ||||||| ||||||| || || ||| || |||||
Sbjct 5692 GTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTCGAATCCAGTGATACCATCGA- 5750
Query 25071 TCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATT 25127
|| || ||| | || | ||| ||||| || || || ||||| ||||||||||| ||
Sbjct 5751 -CAATGTCAAGTCGAAGATTCAG-GACAAGGAGGGCATCCCACCGGACCAACAGCGCCTT 5808
Query 25128 ATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAA 25187
|| ||||||||||| ||| | || || | ||||| | ||| |||||||| || ||
Sbjct 5809 ATCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACACTCTCCGACTACAATATCCAGAAG 5868
Query 25188 GAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || ||
Sbjct 5869 GAGTCTACCCTTCACTTGGTTCT 5891
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433276513727435
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |