Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1973 96.9 3e-15 >seq1973 Length=9094 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 || ||||| ||||| || || ||||||| ||||||| || || ||| || ||||| Sbjct 5692 GTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTCGAATCCAGTGATACCATCGA- 5750 Query 25071 TCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATT 25127 || || ||| | || | ||| ||||| || || || ||||| ||||||||||| || Sbjct 5751 -CAATGTCAAGTCGAAGATTCAG-GACAAGGAGGGCATCCCACCGGACCAACAGCGCCTT 5808 Query 25128 ATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAA 25187 || ||||||||||| ||| | || || | ||||| | ||| |||||||| || || Sbjct 5809 ATCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACACTCTCCGACTACAATATCCAGAAG 5868 Query 25188 GAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || Sbjct 5869 GAGTCTACCCTTCACTTGGTTCT 5891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433276513727435