Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2965 98.7 1e-15 >seq2965 Length=6591 Score = 98.7 bits (108), Expect = 1e-15 Identities = 265/398 (67%), Gaps = 22/398 (6%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 |||||| || || || ||||| || |||||| | ||||| || |||||| | || Sbjct 6178 ATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGA-GCAC 6120 Query 92986 A-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 | || ||||| || |||||||| |||| ||| || |||| || || | | || || Sbjct 6119 AAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCTT 6060 Query 93045 TTACT-CTAC--TATTTGG----TGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 ||| || | || |||| || || || || | | | | ||| || Sbjct 6059 GGACTGCTGCCTTACTTGGGCGATGCTTCAAGTGGGAGA-------AGAGAAGGCATGCG 6007 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 |||||||| || | ||| ||||| || || |||||||| ||| ||| || | ||| | Sbjct 6006 AAGTCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCC 5947 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217 | || || || ||||| | ||| || || || || ||| |||| || || ||||| Sbjct 5946 ATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCC 5887 Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-CT--GATC 93274 || ||||| ||||| || || | ||||| ||||| | | | | || || |||| Sbjct 5886 TCAACGGCAGCAAAGGCAACGAGACGTTGAGCAAAGGTAG---ACTCCTTGTCTTGGATC 5830 Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 ||| | |||||||||||| || ||||| || ||||| Sbjct 5829 CATCGGACAGCCCAATCGGCCTTCTTCTTGATGCAAGG 5792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556792939550760