Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq2965 98.7 1e-15
>seq2965
Length=6591
Score = 98.7 bits (108), Expect = 1e-15
Identities = 265/398 (67%), Gaps = 22/398 (6%)
Strand=Plus/Minus
Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985
|||||| || || || ||||| || |||||| | ||||| || |||||| | ||
Sbjct 6178 ATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGA-GCAC 6120
Query 92986 A-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044
| || ||||| || |||||||| |||| ||| || |||| || || | | || ||
Sbjct 6119 AAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCTT 6060
Query 93045 TTACT-CTAC--TATTTGG----TGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097
||| || | || |||| || || || || | | | | ||| ||
Sbjct 6059 GGACTGCTGCCTTACTTGGGCGATGCTTCAAGTGGGAGA-------AGAGAAGGCATGCG 6007
Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157
|||||||| || | ||| ||||| || || |||||||| ||| ||| || | ||| |
Sbjct 6006 AAGTCGGTGTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCC 5947
Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217
| || || || ||||| | ||| || || || || ||| |||| || || |||||
Sbjct 5946 ATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCC 5887
Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-CT--GATC 93274
|| ||||| ||||| || || | ||||| ||||| | | | | || || ||||
Sbjct 5886 TCAACGGCAGCAAAGGCAACGAGACGTTGAGCAAAGGTAG---ACTCCTTGTCTTGGATC 5830
Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312
||| | |||||||||||| || ||||| || |||||
Sbjct 5829 CATCGGACAGCCCAATCGGCCTTCTTCTTGATGCAAGG 5792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556792939550760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |