Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1973 129 5e-25 seq47 82.4 6e-11 >seq1973 Length=9094 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290 || || || || || || || || ||||||| ||||| ||| ||| |||||| | ||| Sbjct 5692 GTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTCGAATCCAGTGATACCATCGAC 5751 Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350 || |||| || ||||| ||||||||||| || ||||| || ||||| || ||||| Sbjct 5752 AATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCACCGGACCAACAGCGCCTTATC 5811 Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 ||||||||||| || | ||||| |||||| ||||||| ||||| || || || || Sbjct 5812 TTTGCCGGCAAGCAACTCGAGGACGGCCGCACACTCTCCGACTACAATATCCAGAAGGAG 5871 Query 22411 TCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||| | || || ||| | || | || || ||| Sbjct 5872 TCTACCCTTCACTTGGTTCTCCGTCTCCGTGGTGGT 5907 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | ||||| || || ||||||| || || ||| | | Sbjct 5908 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACTCTCGAGGTCGAATCTTCA 5967 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| ||| || || || ||||||||||||||||| |||||| Sbjct 5968 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCGGATCAA 6027 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| || | ||||| |||||| ||||||| ||||| Sbjct 6028 CAGCGACTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACACTCTCCGACTACAAT 6087 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || || ||| | ||||| || Sbjct 6088 ATCCAGAAGGAGTCTACCCTTCATTTGGT 6116 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| ||| | ||||| || || | || | ||||| || | | Sbjct 6136 ATGCAGATCTTCGTTAAGACTCTGACCGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 6195 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| ||| || || || ||||||||||||||||| |||||| Sbjct 6196 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCGGATCAA 6255 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| || || |||||| || ||| || ||| |||||| Sbjct 6256 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCGTACCCTCAGCGACTACAAC 6315 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || ||| | ||||| || | || | || ||||| Sbjct 6316 ATTCAAAAGGAGAGCACTTTGCATTTGGTGCTTCGCCTTCGTGGAGG 6362 Score = 82.4 bits (90), Expect = 6e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 |||||||| || |||| || || || || | | || ||| | ||| | |||| Sbjct 5420 ACCGGTAAGACCATCACCCTCGAGGTAGAGTCGTCGGACACCATAGACAACGTCAAGAGC 5479 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || || || || ||||| | || |||||||| || Sbjct 5480 AAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAACGCTTGATCTTTGCCGGAAAG 5539 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| || || | || |||||||||||||| || || || || Sbjct 5540 CAGCTCGAGGATGGTCGTACTCTATCTGATTACAACATTCAGAAGGAGTCGAC 5592 >seq47 Length=33200 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| |||||||| |||||||| ||| | || || || || || Sbjct 24164 AAGATTCAGGACAAGGAGGGAATTCCACCGGATCAACAGCGTTTGATCTTCGCTGGAAAG 24223 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | ||||| || ||| | || || |||||||| || || || || ||| | ||| Sbjct 24224 CAACTCGAGGACGGACGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTCAT 24283 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || || || | || ||||| Sbjct 24284 CTCGTCTTACGTCTACGTGGAGG 24306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419678129624185