Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1338 89.7 1e-12 >seq1338 Length=11427 Score = 89.7 bits (98), Expect = 1e-12 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| ||||||||||| || ||||| || |||||||| || ||||| ||| || Sbjct 9080 TCCCGTATTGCCGTCATTGGACCTAACGGTGCTGGAAAGTCTACTCTCATCAACGTCTTG 9139 Query 280221 ACTGGCGAGACCCAGGCC-ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| || || || || ||| || |||| | || ||||| || || || Sbjct 9140 ACTGGTGA-ACTCATCCCAACTATCGGTGATGTTTACACTCACGAGAACATCCGTATCGC 9198 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| | || ||||||||| ||| ||||| ||||| |||| | ||||||| | | Sbjct 9199 CTACATTAAACAACACGCTTTCGCCCATATCGATCACCACTTGGAGAAGACTCCTTCCGA 9258 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||||| || ||||| | | || | || |||||| ||| | ||||||| Sbjct 9259 GTACATCCAATGGCG-TTTCCAGACCGGAGAGGATCGTGAGACTATGGATCG 9309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027708413868909