Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 158 2e-33
seq231 120 6e-22
seq47 120 6e-22
>seq1973
Length=9094
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | ||||| || || || ||||| || ||||| || || ||||||
Sbjct 6134 CCACCACGGAGACGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAG 6075
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||| | || || || | ||||| |||||||| ||||||| ||||| || ||||||
Sbjct 6074 AGTGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGTCGCTGTTGATCCGGTGGA 6015
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| || || ||||||| |||||| || || ||||||| ||||| ||
Sbjct 6014 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCTGAAGATTCGACC 5955
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || || || || ||||||||||| || |||||
Sbjct 5954 TCGAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 5908
Score = 149 bits (164), Expect = 1e-30
Identities = 163/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || || ||||| || ||||| || || ||||||
Sbjct 5906 CCACCACGGAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAG 5847
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||| | || || || | ||||| ||||| || || || | |||||||| |||||
Sbjct 5846 AGTGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAAGATAAGGCGCTGTTGGTCCGGTGGG 5787
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | |||||| |||||||| || ||||| |||
Sbjct 5786 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCACTGGATTCGACT 5727
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451
|| | |||||||| || || || | |||||||||||
Sbjct 5726 TCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTGACGA 5690
>seq231
Length=23011
Score = 120 bits (132), Expect = 6e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|||||||| ||||| || || | || | ||||| || | ||||| || ||||| ||
Sbjct 15344 TTTTGGATATTATAGTCTGACAAGGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATC 15403
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
| | ||||| || |||||||| || |||||||| || ||||| | |||||| |||
Sbjct 15404 AAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 15463
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| ||||| | || || || || | ||| ||||| || ||||||||||||||||||||
Sbjct 15464 ATAGTGTCCGAAGACTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGAA 15522
>seq47
Length=33200
Score = 120 bits (132), Expect = 6e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293
|||||| || || || || || | || || || ||||| || |||||||| || || ||
Sbjct 24307 TCCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 24248
Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353
|| || | || || || | ||||| || ||||| || | | ||||| || |||||
Sbjct 24247 AAGGGTACGTCCGTCCTCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGATCCGGTGG 24188
Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413
||| || |||||||| |||||||| | ||| || ||||||||||| | || || ||
Sbjct 24187 AATTCCCTCCTTGTCCTGAATCTTGGACTTAACATTATCGATGGTGTCCGAAGACTCAAC 24128
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGA 68439
|| | ||||||||| || |||||||
Sbjct 24127 CTCTAGGGTGATGGTCTTGCCCGTGA 24102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921510088790280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |