Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq2965 176 9e-39
seq1315 167 4e-36
>seq2965
Length=6591
Score = 176 bits (194), Expect = 9e-39
Identities = 362/519 (70%), Gaps = 17/519 (3%)
Strand=Plus/Plus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691
|| ||||||||||||||||| || ||||| || |||||| | || | | | | ||
Sbjct 5792 CCTTGCATCAAGAAGAAGGCCGATTGGGCTGTCCGATGGATCCA-AGACAAGGAGTCTAC 5850
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|| | | | || || |||||| | ||||| ||||| ||||||||| || | ||
Sbjct 5851 CTTTGCTCAACGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCTTT 5910
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810
||| |||||||||||| | ||| || || || ||| | || || |||||||| ||||
Sbjct 5911 CGCATCCATCTTCTGGTTGAAGAAGCGTGGCCTC-ATGGCTGGTCTTACCTTCTCCAACG 5969
Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870
| | ||| | | |||||||| || || | ||||| || ||||| || ||||| ||
Sbjct 5970 AGTTGATCTCCCGTGACGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTC---CC 6026
Query 42871 ACCTCAGGCACAAGCCCTCG-AAGG-AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGA 42928
|| | | ||| |||| | |||| ||| |||| ||| ||||||| ||||| || ||
Sbjct 6027 ACTTGAAGCA-TCGCCCAAGTAAGGCAGC-AGTCCAAGCCGTCATCACCGAGGCTGTTGA 6084
Query 42929 GATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACG 42987
||| ||| | |||||| | || || | || || ||| | || ||||||||||| |
Sbjct 6085 GATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGTG-CTCTTCTCGGCATGAACGCCA 6143
Query 42988 ACCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGT-CT 43045
|| | ||| |||| ||||| ||| |||||| || | ||||| | | ||| |
Sbjct 6144 ACTTGATGAAGCAA-TACATTGAGTTCGTCGCTGATCGGCTCCTCCTCTCTCTCGGTAAT 6202
Query 43046 CAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGG 43105
| | | ||||| | ||| |||||||| |||||||||||||| | | ||
Sbjct 6203 GAAAAG-GTTTACAAGGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGG 6261
Query 43106 CAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144
||||||||||| ||||||||||| ||||| || |||||
Sbjct 6262 AAAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTACCA 6300
>seq1315
Length=11532
Score = 167 bits (184), Expect = 4e-36
Identities = 536/822 (65%), Gaps = 26/822 (3%)
Strand=Plus/Plus
Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGT--GTACTGGACAATCTCGGTGCAGA 244745
|||| |||||| || || ||||| || || || ||| | ||||||||| || || |
Sbjct 328 GCCAAGTTGCAAACAGCAACCTCATC--AGGTGCACAGTATTCGACAATCTCAGTACACA 385
Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805
||| || | |||||| || || | || || ||| ||| |||||| || ||||
Sbjct 386 AGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCT 445
Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865
|||| |||||||| || |||||||| || || |||||| || ||| || |
Sbjct 446 TGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGTACCAAAGCT 505
Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925
||||||| | | ||| |||||||||| | |||||| |||| ||||
Sbjct 506 TTTGGGCCTTGATGCTTTTACGACCCTTGCCCTCAGACTCGTATTTCTCATACAAAGCCT 565
Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985
|||||||| || |||| ||| | | ||| || ||| |||||||| | |||
Sbjct 566 CGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGGGCACATCAATGTCC 625
Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045
| ||| | | | || | || ||||||||| || || |||||||| || | |||||
Sbjct 626 AGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGA 685
Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105
| || | || | ||| ||| || |||||| | || || | || || || |
Sbjct 686 GATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAA 745
Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165
| || ||||||| ||||| | ||| | |||| || || || |||||||| || || |
Sbjct 746 CATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACGCTTGTTACCACCTT 805
Query 245166 GGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221
| | || | | ||| ||| |||||| | || || |||| || || |||||
Sbjct 806 G----ATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATTCCGTTG 861
Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGCCCCTGAGGTTGCTGATGGACAT 245280
|||| ||||| || || ||||| || || |||| | || | ||| || ||||
Sbjct 862 GAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCAC----GGATTCTG-TGAACAT 916
Query 245281 ----GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTA 245336
|| | || || |||| ||| || || | ||| || |||| | ||||| |
Sbjct 917 TGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGTGTCATAGA 976
Query 245337 TGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGG 245396
| || || ||||||||| |||||||| || || ||||| || || || | | |||||
Sbjct 977 TACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAG-TTGTGCTTGT 1035
Query 245397 GGCTGCACGAG--TTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAA 245454
|| || || || ||| || || || ||||||||| ||||| ||| || | ||
Sbjct 1036 GG-TGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGACATCAA 1094
Query 245455 CCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT 245496
||| |||| || ||| || || | || ||||||||
Sbjct 1095 GTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGAT 1136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944224120464240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |