Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2965 176 9e-39 seq1315 167 4e-36 >seq2965 Length=6591 Score = 176 bits (194), Expect = 9e-39 Identities = 362/519 (70%), Gaps = 17/519 (3%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691 || ||||||||||||||||| || ||||| || |||||| | || | | | | || Sbjct 5792 CCTTGCATCAAGAAGAAGGCCGATTGGGCTGTCCGATGGATCCA-AGACAAGGAGTCTAC 5850 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || | | | || || |||||| | ||||| ||||| ||||||||| || | || Sbjct 5851 CTTTGCTCAACGTCTCGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTCAGTGGTTCTTT 5910 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 ||| |||||||||||| | ||| || || || ||| | || || |||||||| |||| Sbjct 5911 CGCATCCATCTTCTGGTTGAAGAAGCGTGGCCTC-ATGGCTGGTCTTACCTTCTCCAACG 5969 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | | ||| | | |||||||| || || | ||||| || ||||| || ||||| || Sbjct 5970 AGTTGATCTCCCGTGACGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTC---CC 6026 Query 42871 ACCTCAGGCACAAGCCCTCG-AAGG-AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGA 42928 || | | ||| |||| | |||| ||| |||| ||| ||||||| ||||| || || Sbjct 6027 ACTTGAAGCA-TCGCCCAAGTAAGGCAGC-AGTCCAAGCCGTCATCACCGAGGCTGTTGA 6084 Query 42929 GATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACG 42987 ||| ||| | |||||| | || || | || || ||| | || ||||||||||| | Sbjct 6085 GATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGTG-CTCTTCTCGGCATGAACGCCA 6143 Query 42988 ACCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGT-CT 43045 || | ||| |||| ||||| ||| |||||| || | ||||| | | ||| | Sbjct 6144 ACTTGATGAAGCAA-TACATTGAGTTCGTCGCTGATCGGCTCCTCCTCTCTCTCGGTAAT 6202 Query 43046 CAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGG 43105 | | | ||||| | ||| |||||||| |||||||||||||| | | || Sbjct 6203 GAAAAG-GTTTACAAGGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGG 6261 Query 43106 CAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||||||||||| ||||||||||| ||||| || ||||| Sbjct 6262 AAAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTACCA 6300 >seq1315 Length=11532 Score = 167 bits (184), Expect = 4e-36 Identities = 536/822 (65%), Gaps = 26/822 (3%) Strand=Plus/Plus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGT--GTACTGGACAATCTCGGTGCAGA 244745 |||| |||||| || || ||||| || || || ||| | ||||||||| || || | Sbjct 328 GCCAAGTTGCAAACAGCAACCTCATC--AGGTGCACAGTATTCGACAATCTCAGTACACA 385 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 ||| || | |||||| || || | || || ||| ||| |||||| || |||| Sbjct 386 AGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCT 445 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865 |||| |||||||| || |||||||| || || |||||| || ||| || | Sbjct 446 TGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGATAGAGTACCAAAGCT 505 Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 ||||||| | | ||| |||||||||| | |||||| |||| |||| Sbjct 506 TTTGGGCCTTGATGCTTTTACGACCCTTGCCCTCAGACTCGTATTTCTCATACAAAGCCT 565 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 |||||||| || |||| ||| | | ||| || ||| |||||||| | ||| Sbjct 566 CGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACTCGTTAGGGCACATCAATGTCC 625 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | ||| | | | || | || ||||||||| || || |||||||| || | ||||| Sbjct 626 AGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAGAAGA 685 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 | || | || | ||| ||| || |||||| | || || | || || || | Sbjct 686 GATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAA 745 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | || ||||||| ||||| | ||| | |||| || || || |||||||| || || | Sbjct 746 CATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCACCAGGACGCTTGTTACCACCTT 805 Query 245166 GGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 | | || | | ||| ||| |||||| | || || |||| || || ||||| Sbjct 806 G----ATCAACATATCGGGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATTCCGTTG 861 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGCCCCTGAGGTTGCTGATGGACAT 245280 |||| ||||| || || ||||| || || |||| | || | ||| || |||| Sbjct 862 GAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTTGCAC----GGATTCTG-TGAACAT 916 Query 245281 ----GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTA 245336 || | || || |||| ||| || || | ||| || |||| | ||||| | Sbjct 917 TGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATCTTCAATGTGTCATAGA 976 Query 245337 TGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGG 245396 | || || ||||||||| |||||||| || || ||||| || || || | | ||||| Sbjct 977 TACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGATGAAAG-TTGTGCTTGT 1035 Query 245397 GGCTGCACGAG--TTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAA 245454 || || || || ||| || || || ||||||||| ||||| ||| || | || Sbjct 1036 GG-TGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAAGTATTTGCTGGACATCAA 1094 Query 245455 CCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT 245496 ||| |||| || ||| || || | || |||||||| Sbjct 1095 GTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGAT 1136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944224120464240