Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1973 143 6e-29 seq231 116 9e-21 seq2965 104 6e-17 >seq1973 Length=9094 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | ||||| || || || |||||||| ||||||| | Sbjct 6134 CCACCACGGAGACGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAG 6075 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | ||| || || ||||| || || ||||||||| ||| Sbjct 6074 AGTGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGTCGCTGTTGATCCGGTGGA 6015 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| || | || || || || || | || ||||| || Sbjct 6014 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCTGAAGATTCGACC 5955 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||| |||||||||||||| || ||||| Sbjct 5954 TCGAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 5908 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || || || | ||| || | ||| | ||||| || ||||| || || |||||| Sbjct 6365 TGTCCTCCACGAAGGCGAAGCACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTCG 6306 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 ||| || || || || || ||||| || || ||||| |||| ||||||||| | Sbjct 6305 CTGAGGGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGT 6246 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||||||||| || | || || || || || | || || || Sbjct 6245 GGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCA 6186 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || ||||| |||||||||||||| ||||| |||||||| Sbjct 6185 ACTTCCAATGTAATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 6136 >seq231 Length=23011 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 ||||||||||||||||| | | |||||||| || || | ||| ||||| ||||||||| Sbjct 15344 TTTTGGATATTATAGTCTGACAAGGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATC 15403 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | |||||||||| ||| ||||| || || |||||||| || | || || || || Sbjct 15404 AAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 15463 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 |||| || || || || || || || || ||||| || || || ||||||||||| Sbjct 15464 ATAGTGTCCGAAGACTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGAA 15522 >seq2965 Length=6591 Score = 104 bits (114), Expect = 6e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 269117 AAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGA 269176 |||||||| | ||| ||| | || ||| || | |||| ||||| ||| | | |||| Sbjct 6093 AAGAGTTCTTGACTGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACGCCAACTTGATGA 6152 Query 269177 ATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGT 269236 | ||||| || || ||||| |||||||| || || | |||||| |||| || || | Sbjct 6153 AGCAATACATTGAGTTCGTCGCTGATCGGCTCCTCCTCTCTCTCGGTAATGAAAAGGTTT 6212 Query 269237 ACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACT 269296 |||| || || |||| ||| ||||| || || |||| |||||||| |||| Sbjct 6213 ACAAGGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAACT 6272 Query 269297 TCTTCGAAAAGCGTGTC 269313 ||||||| ||||||||| Sbjct 6273 TCTTCGAGAAGCGTGTC 6289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179507050474822