Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq1315 163 3e-35
seq2965 111 2e-19
seq5294 98.7 1e-15
>seq1315
Length=11532
Score = 163 bits (180), Expect = 3e-35
Identities = 673/1051 (64%), Gaps = 33/1051 (3%)
Strand=Plus/Plus
Query 114285 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAG 114344
|||| || ||||||||||| ||||| |||| || | || | | ||| ||||| |
Sbjct 134 CATCAGCAAGACCTTGGACGCCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTG 193
Query 114345 CGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 114401
| ||| || || || | || |||||| | | | || | |||||| |||||
Sbjct 194 C---CTCAGGAACTGGGTAGTAGTTGACATCGATGATCTTGTTCAAGTTTTTGACGACAA 250
Query 114402 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACT 114461
| | || ||| |||||||| | | | ||| || || ||||| |||| |||||
Sbjct 251 CTTGGCAGACTTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCATCAACATATG 310
Query 114462 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 114521
| || || || | || |||| || || |||| |||||| || ||| || |
Sbjct 311 TTGGGAGAGCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGA 370
Query 114522 TAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 114581
||| || |||||||| || || ||| ||||| || | |||||||| || ||||
Sbjct 371 CAATCTCAGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTC 430
Query 114582 TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 114641
||| || |||||||||||||||||| | || | || ||||| ||||| | || ||| |
Sbjct 431 GGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGA 490
Query 114642 TAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CT 114695
||| | ||| | || ||| | || | | || |||| |||| ||
Sbjct 491 TAGAGTACCAAA-----GCTTTTGG-GCCTTGATGCTTTTACGACCCTTGCCCTCAGACT 544
Query 114696 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCT 114755
|||| || || | || || ||||| ||||| | | || | | || || ||
Sbjct 545 CGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACT 604
Query 114756 TATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTG 114815
| ||||| | | | ||| | || |||||||||||||||||||| ||||
Sbjct 605 CGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTG 664
Query 114816 GGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 114875
| ||||||||||| |||||||||| || ||| | || || | || || || |
Sbjct 665 GAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTC 724
Query 114876 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 114935
| | || | || || | | ||| |||||||| || || ||||| | |||| | |
Sbjct 725 GGAGGTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCAC 784
Query 114936 CCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAA 114989
| | |||| |||| | || | ||||| | || ||| || || || ||||
Sbjct 785 C---AGGACGCTTGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAA 841
Query 114990 GCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAG-ACTTATTGGCT 115048
|||| |||| ||| || | || | || ||||| || ||| || || || ||
Sbjct 842 GCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTT-GCA 900
Query 115049 CTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCC 115108
| || || | | | ||||||||| || || |||||| || || || |
Sbjct 901 CGGATTCTGTGAACATTGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATC 960
Query 115109 GTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTC 115168
| | || | ||||| || || || ||| |||| | |||||||||||||
Sbjct 961 TTCAATGTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGAT 1020
Query 115169 GACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATA 115228
|| | ||||| |||||||||||| ||| || ||||||| |||||| |||| ||
Sbjct 1021 GAAAGTTGTGCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAA-GTA 1079
Query 115229 CCTTG--GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATAC 115286
||| ||||||| | ||||||||| | | | || ||| || || ||||| || |
Sbjct 1080 -TTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGATTC 1138
Query 115287 CGATCGAGACCCGCATAAACATGTATTGGGG 115317
||| | ||| ||||||| ||| | ||| ||
Sbjct 1139 CGACAGCGACACGCATAATCATATGTTGTGG 1169
>seq2965
Length=6591
Score = 111 bits (122), Expect = 2e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117
|||||||||||||||||||||||| | || || |||||| || || | |||||| ||
Sbjct 5998 GTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCC 5939
Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177
||||||||||||||||| || | || ||||| ||||||||| ||||| ||
Sbjct 5938 ACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTCAACGGC 5879
Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGG 126206
|| || |||| |||||| | ||||||||
Sbjct 5878 AGCAAAGGCAACGAGACGTTGAGCAAAGG 5850
>seq5294
Length=3402
Score = 98.7 bits (108), Expect = 1e-15
Identities = 319/486 (66%), Gaps = 16/486 (3%)
Strand=Plus/Minus
Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624
||||||| || ||| || ||| ||| ||||| |||||||| || |||||||| |
Sbjct 640 TGAACTGGATAGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTGAGAC 581
Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684
|| ||||||| | | |||||| || | ||| | ||||| | ||||
Sbjct 580 CCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTACCCATGGTTGGGTCCTTCATGT 521
Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744
|| |||||| ||| ||||| || || || ||||| || || ||||| | || ||
Sbjct 520 GGATGTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAA-CA 462
Query 113745 CATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 113802
|| | | | ||| ||||||| ||||| ||||||| ||| |||||| |||||||
Sbjct 461 -ATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGAT 403
Query 113803 ATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGA---TCCTTCATATCCTT 113859
| | ||||||||| || ||||| | | | |||| | | |||||| | |
Sbjct 402 GTTTGGAACATTTTGGATCGATCCACCATC---GGCAATGATACGGTTCTTCATGTTATC 346
Query 113860 TGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAAC 113917
|||||||| || || | ||||||| | || ||| | ||||||| |||
Sbjct 345 GGACCAGAGTCCCATATCAACAAGATCCTTGAGAAGCCATGGGT--TGACAACTTGGAAC 288
Query 113918 TCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATT 113976
|| || || || || | ||| ||||| |||| ||||||||||| |||||||| ||
Sbjct 287 TCTCCAGCAAGAACACGCCG-AGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTT 229
Query 113977 GTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 114036
| || | ||| || || ||| || ||||| || || | || | ||||| ||
Sbjct 228 GAATCCAAGGATCTGACTAGTACTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCG 169
Query 114037 GAGACC 114042
|| |||
Sbjct 168 GATACC 163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597280804996920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |