Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1315 163 3e-35 seq2965 111 2e-19 seq5294 98.7 1e-15 >seq1315 Length=11532 Score = 163 bits (180), Expect = 3e-35 Identities = 673/1051 (64%), Gaps = 33/1051 (3%) Strand=Plus/Plus Query 114285 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAG 114344 |||| || ||||||||||| ||||| |||| || | || | | ||| ||||| | Sbjct 134 CATCAGCAAGACCTTGGACGCCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTG 193 Query 114345 CGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 114401 | ||| || || || | || |||||| | | | || | |||||| ||||| Sbjct 194 C---CTCAGGAACTGGGTAGTAGTTGACATCGATGATCTTGTTCAAGTTTTTGACGACAA 250 Query 114402 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACT 114461 | | || ||| |||||||| | | | ||| || || ||||| |||| ||||| Sbjct 251 CTTGGCAGACTTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCATCAACATATG 310 Query 114462 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 114521 | || || || | || |||| || || |||| |||||| || ||| || | Sbjct 311 TTGGGAGAGCAAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGA 370 Query 114522 TAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 114581 ||| || |||||||| || || ||| ||||| || | |||||||| || |||| Sbjct 371 CAATCTCAGTACACAAGTTGGAGCTCCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTC 430 Query 114582 TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 114641 ||| || |||||||||||||||||| | || | || ||||| ||||| | || ||| | Sbjct 431 GGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCGAGGA 490 Query 114642 TAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CT 114695 ||| | ||| | || ||| | || | | || |||| |||| || Sbjct 491 TAGAGTACCAAA-----GCTTTTGG-GCCTTGATGCTTTTACGACCCTTGCCCTCAGACT 544 Query 114696 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCT 114755 |||| || || | || || ||||| ||||| | | || | | || || || Sbjct 545 CGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAGCCAGGACACT 604 Query 114756 TATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTG 114815 | ||||| | | | ||| | || |||||||||||||||||||| |||| Sbjct 605 CGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTG 664 Query 114816 GGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 114875 | ||||||||||| |||||||||| || ||| | || || | || || || | Sbjct 665 GAATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTC 724 Query 114876 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 114935 | | || | || || | | ||| |||||||| || || ||||| | |||| | | Sbjct 725 GGAGGTCGAGGAACTCGAAAACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAAGCAC 784 Query 114936 CCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAA 114989 | | |||| |||| | || | ||||| | || ||| || || || |||| Sbjct 785 C---AGGACGCTTGTTACCACCTTGATCAACATATCGGGCGGTGTTGTTGAAAACTCGAA 841 Query 114990 GCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAG-ACTTATTGGCT 115048 |||| |||| ||| || | || | || ||||| || ||| || || || || Sbjct 842 GCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCAGCAATGTAAGCACCGGTT-GCA 900 Query 115049 CTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCC 115108 | || || | | | ||||||||| || || |||||| || || || | Sbjct 901 CGGATTCTGTGAACATTGAGACCAATACCACCAGCGTTCTTTGAAATCATGGCACAAATC 960 Query 115109 GTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTC 115168 | | || | ||||| || || || ||| |||| | ||||||||||||| Sbjct 961 TTCAATGTGTCATAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCATGAT 1020 Query 115169 GACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATA 115228 || | ||||| |||||||||||| ||| || ||||||| |||||| |||| || Sbjct 1021 GAAAGTTGTGCTTGTGGTGTACCAGCAGCGAAAAGTGTTGGTGAGGCGTGGGTGAA-GTA 1079 Query 115229 CCTTG--GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATAC 115286 ||| ||||||| | ||||||||| | | | || ||| || || ||||| || | Sbjct 1080 -TTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCAATATCCTCACCGTGGATTC 1138 Query 115287 CGATCGAGACCCGCATAAACATGTATTGGGG 115317 ||| | ||| ||||||| ||| | ||| || Sbjct 1139 CGACAGCGACACGCATAATCATATGTTGTGG 1169 >seq2965 Length=6591 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||||||||||||||||||||| | || || |||||| || || | |||||| || Sbjct 5998 GTGGAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCC 5939 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 ||||||||||||||||| || | || ||||| ||||||||| ||||| || Sbjct 5938 ACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTCAACGGC 5879 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGG 126206 || || |||| |||||| | |||||||| Sbjct 5878 AGCAAAGGCAACGAGACGTTGAGCAAAGG 5850 >seq5294 Length=3402 Score = 98.7 bits (108), Expect = 1e-15 Identities = 319/486 (66%), Gaps = 16/486 (3%) Strand=Plus/Minus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 ||||||| || ||| || ||| ||| ||||| |||||||| || |||||||| | Sbjct 640 TGAACTGGATAGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTGAGAC 581 Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684 || ||||||| | | |||||| || | ||| | ||||| | |||| Sbjct 580 CCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTACCCATGGTTGGGTCCTTCATGT 521 Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744 || |||||| ||| ||||| || || || ||||| || || ||||| | || || Sbjct 520 GGATGTTCATTGATTGAGATTGGTCAATAAATGCACCACGGTCAGCAGCCATCTGAA-CA 462 Query 113745 CATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 113802 || | | | ||| ||||||| ||||| ||||||| ||| |||||| ||||||| Sbjct 461 -ATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGATATCAGCTGGGAT 403 Query 113803 ATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGA---TCCTTCATATCCTT 113859 | | ||||||||| || ||||| | | | |||| | | |||||| | | Sbjct 402 GTTTGGAACATTTTGGATCGATCCACCATC---GGCAATGATACGGTTCTTCATGTTATC 346 Query 113860 TGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAAC 113917 |||||||| || || | ||||||| | || ||| | ||||||| ||| Sbjct 345 GGACCAGAGTCCCATATCAACAAGATCCTTGAGAAGCCATGGGT--TGACAACTTGGAAC 288 Query 113918 TCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATT 113976 || || || || || | ||| ||||| |||| ||||||||||| |||||||| || Sbjct 287 TCTCCAGCAAGAACACGCCG-AGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTT 229 Query 113977 GTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 114036 | || | ||| || || ||| || ||||| || || | || | ||||| || Sbjct 228 GAATCCAAGGATCTGACTAGTACTGGCAGTTGGCATAGGAGCGACAAGCAAACTGTTGCG 169 Query 114037 GAGACC 114042 || ||| Sbjct 168 GATACC 163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597280804996920