Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 111 2e-19
>seq1973
Length=9094
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
|||||||| | || |||||| || |||||||| || | || || || |||| ||
Sbjct 6116 ACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTCCTCG 6057
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
|| ||||| || ||||| ||||||||||| || || | ||| | | |||||| ||| |
Sbjct 6056 AGTTGCTTGCCGGCGAAAATGAGTCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGG 5997
Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179
|| ||| |||| | | | ||||| ||||| || |||| |||||||| |||
Sbjct 5996 ATCTTTGACTTGACATTATCAATTGTGTCTGAAGATTCGACCTCGAGAGTGATGGTCTTG 5937
Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || || ||||| || |||||||||||
Sbjct 5936 CCGGTAAGAGTCTTGACGAAGATTTGCAT 5908
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
|||||||||||| ||||||||||||||||| ||||| || || || || | || ||
Sbjct 6345 CACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTCGCTGAGGGTACGACCATCCTC 6286
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
| ||||| || ||||| || | |||||| || || | ||| | | |||||| |||
Sbjct 6285 CAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTG 6226
Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
||| ||| |||| | | | ||||| || || || || | || || || ||
Sbjct 6225 GATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTT 6166
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| || || ||||| || ||||| |||||
Sbjct 6165 GCCGGTCAGAGTCTTAACGAAGATCTGCAT 6136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543146602730160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |