Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1973 109 5e-19 >seq1973 Length=9094 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||||| || || || || || || ||||| || | || ||||| |||| Sbjct 6120 AAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTC 6061 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || || ||||||||||| ||||||| ||||| || || || ||||| || || || || Sbjct 6060 CTCGAGTTGCTTGCCGGCGAAAATGAGTCGCTGTTGATCCGGTGGAATACCCTCCTTATC 6001 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || ||| ||| ||| || | ||| || | || || || | ||| | ||| Sbjct 6000 CTGGATCTTTGACTTGACATTATCAATTGTGTCTGAAGATTCGACCTCGAGAGTGATGGT 5941 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||| | ||| || ||||| |||||||| Sbjct 5940 CTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 5908 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || || || || ||||| || | || ||||| |||| || || ||| Sbjct 5882 TGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTCCTCGAGTTGC 5823 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||||||| | || || ||||| ||||| || || || || || || || || || || Sbjct 5822 TTGCCGGCAAAGATAAGGCGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGAATCTTC 5763 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | ||||||| || || ||||| | ||| | ||||||||| ||| Sbjct 5762 GACTTGACATTGTCGATGGTATCACTGGATTCGACTTCGAGAGTGATGGTCTTGCCAGTC 5703 Query 64421 AAAGTTTTTACGA 64433 || || || |||| Sbjct 5702 AAGGTCTTGACGA 5690 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || |||||||||||||| || || ||| || | || || | ||||||||||| || Sbjct 6326 TCCTTTTGAATGTTGTAGTCGCTGAGGGTACGACCATCCTCCAATTGCTTGCCGGCGAAA 6267 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | ||||| || || || ||||| || || || || || || ||| ||| ||| Sbjct 6266 ATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 6207 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||| || | || ||||| | || | ||||||||||||| ||| || ||| Sbjct 6206 TCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGCCGGTCAGAGTCTTAACG 6147 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 6146 AAGATCTGCAT 6136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499583912035560